Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0448
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)                 31   0.95 
SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)             27   8.8  
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 27   8.8  

>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 1381

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 457  NCIYCSLEITMHLFKTTAGLLSKLFFTSDCTMCAGTLLI 341
            +CI     I  HLF+     + KL+  S+C++C  ++++
Sbjct: 1267 SCIASGTTIQSHLFEDRVMKMDKLYIGSECSVCCDSIVL 1305


>SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)
          Length = 203

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 216 RFCLKIVYPKFNFYTFLVFLTIKHRIW 296
           RFC  ++  +  F TF++FL +K  +W
Sbjct: 84  RFCSNLLLLR-GFSTFIIFLMVKRNLW 109


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 552 VFYVCACFYSLCSILKKAKEHLCLRKTSSH*PTVYTVL*R*QCI-CLKRQLDYYPNYFSQ 376
           ++ V  CF+    ++K A++H  + KT S    V+  +        L R  DY P+Y  Q
Sbjct: 242 IWVVALCFFMPAILVKFAEDHN-IEKTKSSTVVVFFAIGSITFRPILGRLSDYLPSYRLQ 300

Query: 375 VIARCALV 352
           +   C LV
Sbjct: 301 IFQLCFLV 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,576,039
Number of Sequences: 59808
Number of extensions: 309848
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)