Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0448
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   7.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 103  VIHIFSSTYKNILTQWNSSY 44
            V+++ SST  +IL  W S +
Sbjct: 1409 VLYVTSSTSSSILLHWKSGH 1428


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 103  VIHIFSSTYKNILTQWNSSY 44
            V+++ SST  +IL  W S +
Sbjct: 1405 VLYVTSSTSSSILLHWKSGH 1424


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 109 NVVIHIFSSTYKNILTQWNSSYQY 38
           N ++HI  ++YK +  + N   QY
Sbjct: 98  NQILHILWTSYKKVFMKDNILRQY 121


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 109 NVVIHIFSSTYKNILTQWNSSYQY 38
           N ++HI  ++YK +  + N   QY
Sbjct: 81  NQILHILWTSYKKVFMKDNILRQY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,048
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)