Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0448
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    29   2.4  
At5g08335.1 68418.m00981 isoprenylcysteine carboxyl methyltransf...    27   9.6  

>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
            RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
            contains Pfam profiles PF04408: Helicase associated
            domain (HA2), PF00271: Helicase conserved C-terminal
            domain
          Length = 1226

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 351  VPAHIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLAS--ENLFYVDRGVLWLSLKLSTN 524
            +P H+  S     L   P  V+   ++++ ++Y+Q A+  E  +  + G ++ S+K S  
Sbjct: 1099 MPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATSVEPHWLAELGPMFFSVKDSDT 1158

Query: 525  YKNKHKRKKQ 554
               +HK+K++
Sbjct: 1159 SMLEHKKKQK 1168


>At5g08335.1 68418.m00981 isoprenylcysteine carboxyl
           methyltransferase family protein / ICMT family protein
           similar to SP|O60725 Protein-S isoprenylcysteine
           O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine
           carboxylmethyltransferase) {Homo sapiens}; contains Pfam
           profile PF04140: Isoprenylcysteine carboxyl
           methyltransferase (ICMT) family
          Length = 197

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 312 VIFFHTKFYVLLLGIRGMCRN*TLDTLFSNRTSAPIV*IAV 190
           +IFFHT  Y+L + I G  +  TL +L  ++  A  + I+V
Sbjct: 20  IIFFHTSEYILAIAIHGASKV-TLSSLLISKHYALAMLISV 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,528,568
Number of Sequences: 28952
Number of extensions: 208107
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)