Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0447
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.7  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   8.3  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   8.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 26  RGRKPLVS*STSLRGV----GEMDFSSHTTLKGDKGSNYTVEVGHEIGALAKACDTQKQL 193
           RGRK L S    + G+     + D     + K  K  NY+  +G   G + +A    + +
Sbjct: 22  RGRKKL-SKHQQIYGIWADDSDNDEEERPSFKSRKPKNYSAPIGFVAGGVQQAGKKPENV 80

Query: 194 GRED 205
            +ED
Sbjct: 81  KKED 84


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 198 RPSCFCVSQALARAPI 151
           RPS + +S+ LA +PI
Sbjct: 486 RPSIYFISKTLAESPI 501


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 198 RPSCFCVSQALARAPI 151
           RPS + +S+ LA +PI
Sbjct: 486 RPSIYFISKTLAESPI 501


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 306 IGLLTHEFLLDVLSDL 259
           +  L H FL D+LSD+
Sbjct: 195 VNALDHLFLNDILSDI 210


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 306 IGLLTHEFLLDVLSDL 259
           +  L H FL D+LSD+
Sbjct: 151 VNALDHLFLNDILSDI 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,213
Number of Sequences: 336
Number of extensions: 2681
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)