Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0447
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   5.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   6.6  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   8.8  

>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 262 ITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNG 369
           I Q  +++FV   +   + L  +  + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 TVEVGHEIGALAKACDTQKQLGREDFL 211
           TVE   E+    + C + KQ G EDFL
Sbjct: 152 TVESEKELIKAIRTCISSKQYGNEDFL 178


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 154 RSPGQSL*HAEAAWPRGFSSSTGEVTKNSDLLHDAEITQYIEEEF-VSQQADTI 312
           +S G S+ H    W +G +S  G V +    L    I +Y+ ++F V+Q  D +
Sbjct: 724 KSDGTSIAH----WLQGLASFCGRVFRRYSSLDCTSIVEYVIKQFKVNQMFDLV 773


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 399 RRVPPEGRLNKVLKPHSILPFSSIFFF 479
           RR+P  GR+  VLKP ++ P  + F F
Sbjct: 78  RRLP--GRIGTVLKPSALFPAIAPFLF 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,733
Number of Sequences: 5004
Number of extensions: 44209
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)