Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0447
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    32   0.42 
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    31   0.73 
03_05_0928 + 28888405-28889121                                         30   1.3  
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    30   1.7  
09_04_0402 - 17304828-17305622                                         29   3.0  
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369...    29   3.0  
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665...    28   6.8  

>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 265 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 411
           T Y     +S     +  LAGHT+D+     E  G++L LA  L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 184 EAAWPRGFSSS--TGEVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFIT 357
           +  W R    S  +   T N DL H A+I  YI  E    +   ++   GHTSD + F  
Sbjct: 252 QETWSRSLEQSDQSNITTGNRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSR 310

Query: 358 ENN 366
           E +
Sbjct: 311 EKS 313


>03_05_0928 + 28888405-28889121
          Length = 238

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 101 TLKGDKGSNYTVEVGHEIGALAKACDTQKQLGREDFL 211
           T   D    YT + GH  G L  AC   +   R+DFL
Sbjct: 25  TYANDGCCEYTPDDGHPAGLLCAACGCHRNFHRKDFL 61


>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 294 THEFLLDVLSDLSIVEEVAVFSDFPCG*RKSSRPSCFCVSQALARAPISW 145
           TH+ L++VLSDL+   +  + S    G    SRP  FC+++   R P+S+
Sbjct: 131 THDQLIEVLSDLNFNTQEFILSPLQFG-IPYSRPRYFCLAK---REPVSF 176


>09_04_0402 - 17304828-17305622
          Length = 264

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 267 SIHRGGIRESASRYDS*PRG-SHLGPQAVHNREQRERLVSRRIPLRRVPPEGRLNKVLKP 443
           S H GG RE   +    P   S  GP A+  REQRER   RR  L   P   R + V   
Sbjct: 166 SRHGGGEREKREQQRRRPHSFSAHGPSAL--REQRERWRRRRGQLSSAPASLRASPVNSG 223

Query: 444 H 446
           H
Sbjct: 224 H 224


>09_02_0057 -
           3697255-3698116,3698191-3698351,3698442-3698636,
           3698728-3699126,3699208-3699477,3700102-3700695
          Length = 826

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = +3

Query: 165 PKPVTRR---SSLAERIFFIHRGSH*KQRPPPRC*DHSIHRGGIRESASRYDS*PRGSHL 335
           P P  +R   SS A R     R S  ++ PPP       H GG  ES        R S  
Sbjct: 86  PPPAAKRERSSSRAPRDSVERRDSADREAPPPSSRKRKGHEGGGNESDPEGGKRARASVE 145

Query: 336 GPQAVHNREQRER 374
            P     R +RER
Sbjct: 146 PPPPKEERPRRER 158


>12_02_0944 -
           24666114-24666200,24666287-24666352,24666450-24666515,
           24666607-24666825,24666927-24667403
          Length = 304

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 321 RGSHLGPQAVHNREQRERLVSRRIPLRRVPPEG 419
           RG+   PQ+++ R++RER+  R   L+ + P G
Sbjct: 220 RGAATDPQSLYARKRRERINERLKTLQNLVPNG 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,836,102
Number of Sequences: 37544
Number of extensions: 299106
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)