Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0447
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)                 36   0.020
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.046
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.080
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              32   0.43 
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 32   0.43 
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   4.0  
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)            29   4.0  
SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)                    28   7.0  
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)                  28   7.0  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064)             28   7.0  
SB_26882| Best HMM Match : MCPsignal (HMM E-Value=0.00063)             28   7.0  
SB_28565| Best HMM Match : PCI (HMM E-Value=0.73)                      27   9.2  
SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +1

Query: 253 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 348
           DA++T +IE  F+++Q + I+ LAGH ++LKR
Sbjct: 309 DAQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 14/42 (33%), Positives = 31/42 (73%)
 Frame = +1

Query: 223 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 348
           E+ K ++   DA+++ +IE+ F+++Q ++IR L+G+ + LK+
Sbjct: 94  ELEKTAEKNGDAQMSDFIEDHFLTEQVESIRELSGYIAVLKK 135


>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
          Length = 88

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/41 (36%), Positives = 28/41 (68%)
 Frame = +1

Query: 250 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 372
           +DA++  +IEE F+++Q D+I+ L+ + S L+R   E  G+
Sbjct: 39  NDAQMQDFIEETFLNEQMDSIKQLSNYVSTLRRLGGEGLGE 79


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 15/62 (24%), Positives = 36/62 (58%)
 Frame = +1

Query: 163 GQSL*HAEAAWPRGFSSSTGEVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDL 342
           GQ +  A     +  + +  ++ K ++   D+++  ++E  ++++Q + I+ LAGH ++L
Sbjct: 226 GQDVIQAALDLEKHVNQALHDLHKVAEKHGDSQMQDWLESHYLTEQVEAIKELAGHMTNL 285

Query: 343 KR 348
           KR
Sbjct: 286 KR 287


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 11/32 (34%), Positives = 24/32 (75%)
 Frame = +1

Query: 253 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 348
           D+++  ++E  ++++Q + I+ LAGH ++LKR
Sbjct: 241 DSQMQDWLESHYLTEQVEAIKELAGHLTNLKR 272


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = +1

Query: 223 EVTKNSDLLHDAEITQYIE--------EEFVSQQADTIRSLAGHTSDLKRFITENNG 369
           EVT N+  L D  +TQ  E        EE+V +    IR +   T  +KR+IT++NG
Sbjct: 183 EVT-NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +2

Query: 227 SLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCL 382
           SLK +  ++   SL TSR+     K  R  + + +P+TSS S P+T+ KT L
Sbjct: 121 SLKRSLKTSPKTSLKTSRKTD--RKKSRNTSPKRSPKTSSKSSPKTSPKTSL 170


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 227 SLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 385
           S KT+  +  ++SL TS + S    P      R +P+TSS + P+T+ KT L+
Sbjct: 349 SPKTSPKTMRMKSLKTSPKTSPEISP------RTSPKTSSKTSPKTSLKTSLN 395


>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
          Length = 651

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 345 LEVRGVTREATNRIGLLTHEFLLDV-LSDLSIVEEVAVFSDFPCG*RKSSRPSCFCVSQA 169
           LE  G T   T    LLTH  LL+  L  L  +    V   F CG +K +  +CF +++ 
Sbjct: 58  LESYGNTERKTKE--LLTHFDLLEKELEQLLDIRNSTVADKFSCGEKKCAYMACFGIAEF 115

Query: 168 LAR 160
             R
Sbjct: 116 FKR 118


>SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)
          Length = 420

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 53  STSLRGVGEMDFSSHTTLKGDKGSNYTVEVGHEIGALAKA 172
           S+S R VG+ D  +   ++ ++  NYT+ V ++ G  A A
Sbjct: 186 SSSSREVGQGDSLNLPNVRSNQTGNYTITVSNQYGGRASA 225


>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
          Length = 240

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 227 SLKTATSSTMLRSLNTSRRNS*VSKPIRF--VASRVTPRTSSGS*PRTTGKT 376
           S KT+  +  ++SL TS + S    P      +S+ +P+TS  S P+T+ KT
Sbjct: 101 SPKTSPKTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKT 152


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
 Frame = +1

Query: 202 GFSSSTGEVTKNSDL-LHDAEITQYIEEEFVSQ-----QADTIR----SLAGHTSDLKRF 351
           G S++   +T  +DL + D E+ +Y+++  +S+     +A TI+    SLA   +  K  
Sbjct: 427 GSSTTEALITMINDLDIADTELWKYVDDTTISETVPKSKASTIQAAVNSLASSAASXKFQ 486

Query: 352 ITENNGKDLSLAVYLFDEYLQKVV 423
           + E+  K++ ++    D Y   +V
Sbjct: 487 LNESRCKEMRISFSTSDTYFDPIV 510


>SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064)
          Length = 257

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 208 SSSTGEVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLA 387
           + STGE+TK  D     EI    +E  ++ + D I    G  +D    IT+  GK     
Sbjct: 80  TDSTGEITKTKD-----EIIDSTDE--ITDRTDKITDRTGEITDRTDKITDRTGKITDST 132

Query: 388 VYLFD 402
           V + D
Sbjct: 133 VEITD 137


>SB_26882| Best HMM Match : MCPsignal (HMM E-Value=0.00063)
          Length = 217

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 208 SSSTGEVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLA 387
           + STGE+TK  D     EI    +E  ++ + D I    G  +D    IT+  GK     
Sbjct: 61  TDSTGEITKTKD-----EIIDSTDE--ITDRTDKITDRTGEITDRTDKITDRTGKITDST 113

Query: 388 VYLFD 402
           V + D
Sbjct: 114 VEITD 118


>SB_28565| Best HMM Match : PCI (HMM E-Value=0.73)
          Length = 119

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -3

Query: 84 SISPTPLSDVLYETNGFLPRIVRL 13
          S+SPTP+  V YET+  LP IV++
Sbjct: 19 SVSPTPMIVVAYETH-LLPAIVKV 41


>SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 411 PEGRLNKVLKPHSILPFSSIFFFKQATLNF*VQIWLFNCDVSILVLSKKY 560
           PEG+L +V  PH   P+    FF+ + L    +   F    SILV  + Y
Sbjct: 324 PEGKLARVASPHLFPPYGGHSFFEWSLLR--RKHAFFQHSRSILVFRRYY 371


>SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 222 GSH*KQRPPPRC*DHSIHRGGIRESASRYDS*PRGSHLGP 341
           G H  + P      H   R G  ESA RYD   RG+H  P
Sbjct: 15  GDHDAESPETPSDGHGSARPGTTESAGRYD---RGTHPAP 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,598
Number of Sequences: 59808
Number of extensions: 330403
Number of successful extensions: 758
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)