Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0447
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 34 0.071
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 34 0.071
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 32 0.29
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 31 0.66
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ... 30 1.2
AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical ... 29 2.0
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 4.6
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 4.6
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 4.6
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.071
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 250 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 348
+DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 34.3 bits (75), Expect = 0.071
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 226 VTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 375
V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 43 VLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 137 EVGHEIGALAKACDTQKQLGREDFLHPQGKSLKTATSSTMLRSLNTSRR 283
E G +G ++KA D +K L + +HP+GK + S + SLNT R
Sbjct: 78 EQGSYVGEVSKAMDKKKVLVK---VHPEGKYVVDVDKSIDINSLNTGAR 123
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 250 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 348
+DA +T +IEE+++ +Q +I A ++LKR
Sbjct: 121 NDAHLTDFIEEKYLDEQVKSINEFARMVANLKR 153
>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
protein Y45G5AM.2 protein.
Length = 1061
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 113 DKGSNYTVEVGHEIGALAKACDTQKQLGREDF 208
D G +Y E GH +G DTQ +GRE +
Sbjct: 921 DAGLDYDHETGHSVGHFLNIRDTQIVIGREPY 952
>AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical
protein Y111B2A.8 protein.
Length = 582
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 205 FSSSTGEVTKNSDLLHDAEITQYIEEEFVSQQADTIRSL--AGH 330
F ST K+++ +H+A + EE++ DT++SL +GH
Sbjct: 67 FGRSTKRRAKDAEAIHEAGEEEEDEEDYTQDNYDTVKSLPASGH 110
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 223 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 372
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 223 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 372
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 274 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 393
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 274 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 393
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,446,389
Number of Sequences: 27780
Number of extensions: 253243
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -