Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0447
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    29   2.5  
At3g19920.1 68416.m02522 expressed protein                             29   3.3  
At5g64660.1 68418.m08126 U-box domain-containing protein similar...    28   4.3  
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont...    28   4.3  
At3g25570.1 68416.m03180 adenosylmethionine decarboxylase family...    28   5.7  
At2g44840.1 68415.m05583 ethylene-responsive element-binding pro...    27   7.5  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    27   7.5  
At5g17540.1 68418.m02058 transferase family protein similar to h...    27   10.0 
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr...    27   10.0 
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p...    27   10.0 

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +1

Query: 250 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 348
           +D  +  +IE EF+++Q + I+ ++ + + L+R
Sbjct: 210 NDVHLADFIESEFLTEQVEAIKLISEYVAQLRR 242


>At3g19920.1 68416.m02522 expressed protein 
          Length = 416

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 372 FPVVLGYEPLEVRGVTREATNRIGLLTHEFLL-DVLSDLSI 253
           FPV+ GYE +EV     +A + +  L  E LL + L D S+
Sbjct: 352 FPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQDFSV 392


>At5g64660.1 68418.m08126 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 420

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 199 RGFSSSTGEVTKNS-DLLH--DAEITQYIEEEFVSQQADTIRSLAGHTSDLKRF--ITEN 363
           RGF +   +  K   DL++  D E T   +   V +    + ++    SD +RF  +   
Sbjct: 133 RGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSKVSDRRRFSNLILT 192

Query: 364 NGKD-LSLAVYLF 399
           NG+D LS+ VYLF
Sbjct: 193 NGRDRLSVIVYLF 205


>At5g10660.1 68418.m01234 calmodulin-binding protein-related
           contains weak similarity to calmodulin-binding proteins
          Length = 407

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 176 DTQKQLGREDFLHPQGKSLKTATSSTMLRSLNTS 277
           + QK L R  F HP   SL + ++S+  RSLNTS
Sbjct: 77  ENQKLLRRRSFDHPP-SSLTSPSTSSAHRSLNTS 109


>At3g25570.1 68416.m03180 adenosylmethionine decarboxylase family
           protein contains Pfam profile: PF01536
           adenosylmethionine decarboxylase
          Length = 349

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 203 DFLHPQGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTS 343
           DFL PQGKSL++ T S +   L  +      S    FV S V   +S
Sbjct: 24  DFLDPQGKSLRSLTKSQLDEILTPAECTIVSSLTNSFVDSYVLSESS 70


>At2g44840.1 68415.m05583 ethylene-responsive element-binding
           protein, putative
          Length = 226

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 263 ISASWRRSLFLVTSPVDEENPLGQAASACH 174
           +S+ W  S+  VTSP +E  P    AS  H
Sbjct: 54  VSSGWTPSVPPVTSPAEENKPPATKASGSH 83


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 321 RGSHLGPQAVHNREQRERLVSRRIPLRRVPP 413
           RG H G   VH+ + R  +  +R P+ R  P
Sbjct: 750 RGEHNGKAPVHHSQPRNEMKEQRKPVNRFKP 780


>At5g17540.1 68418.m02058 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 461

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -2

Query: 223 PLWMKKILSAKLLLRVT 173
           P+W + +LSA++LLRVT
Sbjct: 193 PVWERHLLSARVLLRVT 209


>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 352

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 321 RGSHLGPQAVHNREQRERLVSRRIPLRRVPPEG 419
           RG+   PQ+++ R++RER+  R   L+ + P G
Sbjct: 270 RGAATDPQSLYARKRRERINERLRILQNLVPNG 302


>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
           protein contains Pfam profile PF00010: Helix-loop-helix
           DNA-binding domain; PMID: 12679534; putative bHLH084
           transcription factor
          Length = 328

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 321 RGSHLGPQAVHNREQRERLVSRRIPLRRVPPEG 419
           RG+   PQ+++ R++RER+  R   L+ + P G
Sbjct: 241 RGAATDPQSLYARKRRERINERLRILQHLVPNG 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,334
Number of Sequences: 28952
Number of extensions: 238810
Number of successful extensions: 542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)