Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0443
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 56 1e-08
01_01_0043 - 321810-321973,322054-322846 31 0.44
01_01_0044 - 326337-326500,326618-327398 31 0.58
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 30 1.0
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 29 3.1
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 29 3.1
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849... 27 7.2
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890... 27 7.2
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085... 27 9.5
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100... 27 9.5
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = +2
Query: 356 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDY 532
+G+Q+++P+RG + LK+ GDLGQ++ Y+ D +SI + SNVVINL+GR+Y
Sbjct: 1 MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREY 59
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 31.5 bits (68), Expect = 0.44
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 263 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 430
+GG + V G TG++GR+V ++G T L+ D AQ L D
Sbjct: 3 SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62
Query: 431 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 520
G L L D S+ +AVR ++VVI+ V
Sbjct: 63 GVTLLHG-DLHDHASLLRAVRDADVVISAV 91
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.1 bits (67), Expect = 0.58
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 263 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 430
+GG + I+ V G TG++GR+V ++G T L+ D +Q L+ D
Sbjct: 3 SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60
Query: 431 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 523
G L L D S+ AVR ++VVI+ +G
Sbjct: 61 GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 269 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 430
GR+ VA V G + +GR + LGK G ++I+ Y +A+ +VC ++
Sbjct: 3 GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 367 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 233
+ ++FS A+ SDK EN G + ++ + TS KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 293 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 463
+A V G +G VC +L G +IL R + ++ +C +L ++F +L
Sbjct: 90 LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149
Query: 464 DEESIAKAVRYSN 502
D S A RY N
Sbjct: 150 DGNSRASLARYIN 162
>12_02_0752 +
22784052-22784288,22784531-22784704,22784799-22784930,
22785062-22785439
Length = 306
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 113 YLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNL 244
YLSHK++ I L T KL+ + S+S V + DR P+L
Sbjct: 121 YLSHKISTIELGTMVFQKLVPV--SLSNVMCTVKILALDRAPDL 162
>03_02_0499 -
8908323-8908423,8908822-8908972,8909761-8909867,
8909954-8910170,8910941-8911148,8911261-8911358
Length = 293
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 269 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK 415
GR S +G +A V G T +GR V +L +G + R + +RLK
Sbjct: 14 GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLK 62
>06_03_0019 +
15506702-15506896,15507741-15507875,15508264-15508501,
15508652-15508855,15508945-15509111
Length = 312
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 302 VFGCTGFVGRYVCNKLGKIG--TQLIL--PYRGDFYDAQRLKVCGDLGQVLFTPYHLLDE 469
V G TG++GRY+ + T +++ P D A L+ D G L L
Sbjct: 13 VIGGTGYIGRYIVAASAREDHLTSVLVRDPAPADPAKAAVLQGFRDSGATL-VKGDLYGH 71
Query: 470 ESIAKAVRYSNVVINLVG 523
+S+ A++ ++VVI+ VG
Sbjct: 72 QSLVAAIKSADVVISAVG 89
>03_01_0130 -
1007433-1007712,1007739-1007803,1007804-1008001,
1008103-1008273,1008405-1008553,1008780-1008927,
1009015-1009083,1009168-1009416,1009516-1009710,
1009869-1009985,1010205-1011329
Length = 921
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 492 RTAFAIDSSSRRW*GVNRTWPKSPHTFNLWAS 397
+TA +D+ S W G++ W PH +W S
Sbjct: 60 KTARTVDAKSSNWSGMDVVW---PHGHGVWGS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,244,439
Number of Sequences: 37544
Number of extensions: 278312
Number of successful extensions: 604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -