Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0443
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   5e-34
SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)                  29   1.8  
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)             29   1.8  
SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)               28   5.5  
SB_32398| Best HMM Match : PspC (HMM E-Value=1.4)                      28   5.5  
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   5.5  
SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)               28   5.5  
SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_42156| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score =  140 bits (340), Expect = 5e-34
 Identities = 61/93 (65%), Positives = 79/93 (84%)
 Frame = +2

Query: 254 KRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLG 433
           K+GTGGRSSFNG+ ATVFG TGF+GRYV N+LG++GTQL +PYRGD +D + L++ GDLG
Sbjct: 9   KKGTGGRSSFNGVSATVFGATGFLGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLG 68

Query: 434 QVLFTPYHLLDEESIAKAVRYSNVVINLVGRDY 532
           Q+ F  +HL DEESIAK V++SNVV+NL+GR +
Sbjct: 69  QIDFFDFHLKDEESIAKMVKHSNVVVNLIGRGF 101


>SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)
          Length = 476

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +2

Query: 8   GGALARGLYTHYTLALSLSILNGSIMKVYK*ELSQYLSHKMAAIALKTQATSKLLHLNGS 187
           G +   G  T Y      S LNG +      EL+ YL+ KM +  L  + TS   +LNG 
Sbjct: 205 GNSYLNGKMTSYLNGKMTSYLNGEMTSYLNSELTSYLNGKMTSY-LNGKLTS---YLNGK 260

Query: 188 MS 193
           M+
Sbjct: 261 MT 262



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +2

Query: 35  THYTLALSLSILNGSIMKVYK*ELSQYLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAA 214
           T Y      S LNG +      ++++YL+ KMA+  L  + TS   +LNG M+  Y+   
Sbjct: 238 TSYLNGKMTSYLNGKLTSYLNGKMTRYLNGKMASY-LNGKLTS---YLNGKMT-RYLNGK 292

Query: 215 NYS 223
           N S
Sbjct: 293 NTS 295


>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
          Length = 441

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 302 VFGCTGFVGRYVCNKLGKIGTQLILPYRGDFY 397
           VFG  GF+G  V ++L K G  + +  RG++Y
Sbjct: 30  VFGGNGFIGSEVVSRLIKQGDDITIVNRGNWY 61


>SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)
          Length = 349

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 367 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLIC 248
           LGT+ S F+  IA  K GAT      A    AA +  ++C
Sbjct: 2   LGTSISYFIVQIADWKFGATRFGPQPAYIGKAALAMMIVC 41


>SB_32398| Best HMM Match : PspC (HMM E-Value=1.4)
          Length = 203

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 316 GATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 182
           G  ++   D V+       ++I C   FT+  V  GFD++ T  P
Sbjct: 59  GTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 103


>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 612

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 215 NYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYV 337
           NY+S R+  L +     GGR  ++G+VATV     F G Y+
Sbjct: 463 NYTSMRQA-LVSIWTNEGGRGLYSGLVATVARDAPFSGLYL 502


>SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)
          Length = 512

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 316 GATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 182
           G  ++   D V+       ++I C   FT+  V  GFD++ T  P
Sbjct: 293 GTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 337


>SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 401 HHRNRLCMVKLTGYQFFPICCTHSVRQIRCNRKLWLRC 288
           + R+  C+ K    Q       HS+   RCN  LW+RC
Sbjct: 126 NQRSFTCVKKTVLLQNGAQIIKHSIVPTRCNIGLWIRC 163


>SB_42156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 447 VNRTWPKSPHTFNLWAS*KSPLYGKINWVPIFP 349
           +N TW +  HT N W S KSPL   +  +  FP
Sbjct: 553 LNATWQR--HTNNAWISKKSPLQKTLLRIIQFP 583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,442
Number of Sequences: 59808
Number of extensions: 342192
Number of successful extensions: 1101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)