Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0442
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 29 0.37
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 29 0.37
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 29 0.49
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 28 0.86
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 4.6
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 4.6
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 4.6
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 6.1
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 6.1
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 6.1
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 8.0
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 8.0
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 25 8.0
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 8.0
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 8.0
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.37
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 394 GLILFLNFSIRFLLIGTVTRVFLSLEFIIDSKDTNCPLWSDVN*LIIFLLIGVTFVNMLS 573
GL LF FS+ F L+G + V +L + I T LW + ++ + I ++ + S
Sbjct: 59 GLSLFSVFSVSFSLLGLLPSVATTLPYSIGYTGTPGLLWGWLIAMVFIICIALSMAELCS 118
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.37
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 328 INMVFTDVFIPKTVTLKNKTVFSEWATTGVYKSRKKL-YDLYSEKAYNNDETFHQYVR-N 155
I M T + P+ T N W V ++R K+ +D +S + ND + + + N
Sbjct: 41 IRMCITLLVHPEYPTSSNIQESCNWILQQVVENRSKINFDAWS---FENDLSDNDMPKEN 97
Query: 154 YSKLFRKVCLAAKSLHLSDLI 92
Y K+F CL + + DLI
Sbjct: 98 YLKIFSNQCLFTQDVDYWDLI 118
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 29.1 bits (62), Expect = 0.49
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = -2
Query: 403 ILSQEHSEIIYNKNPNLSYQNMFERINMVFTDVFIPKTVTLKNKTVFSEWA--TTGVYKS 230
+LSQ +S I N + Q R+ + P+ V L W +TG+
Sbjct: 90 LLSQLNSLNIQNATEDEKLQETSIRLLLYIVQRKFPEAVDLDWSPQGIPWTETSTGICIL 149
Query: 229 RKKLYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSL 110
+ + ++ A NDE +QYVR+ L + + K L
Sbjct: 150 QATVLSSLAQYAQANDEVAYQYVRSAIGLIQNANIGKKPL 189
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 28.3 bits (60), Expect = 0.86
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 273 KRCSASGPPPECTKVEKNCMI--CTLKKLIIMMKHFI 169
K C G PE TK KNC I L +L ++M H +
Sbjct: 300 KLCHEKGLEPEFTKWSKNCPIDKADLPRLALLMIHAV 336
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 4.6
Identities = 26/90 (28%), Positives = 38/90 (42%)
Frame = +3
Query: 222 FFLLLYTPVVAHSLNTVLFFNVTVLGINTSVKTILILSNIFWYDKFGFLL*IISECSWLN 401
FF+LL + +L +LF VLG+ + V I+ ++ +DK E S L
Sbjct: 250 FFILLLVCIPIWTLKHMLFGLFQVLGVQSCV-VIVTKGLMYLFDKHIDATGYEIEASSLF 308
Query: 402 IISKLLNSFFINRNSHKSIFIFRIHNRFKR 491
+I L FF S I+ H R R
Sbjct: 309 VIGNFL--FFYEMGSLYIPVIYSNHTRTSR 336
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 4.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = -2
Query: 238 YKSRKKLYDLYSEK----AYNNDETFHQ-YVRNYSKLFRKVCLAAKSLHLSDLIK 89
Y +K YD Y E + N+E H Y RN KL L A S D+++
Sbjct: 176 YYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELDNLVAVSFERDDIVE 230
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 307 VFIPKTVTLKNKTVFSEWATTGVYKSRKKLYDLYSEKAYNNDE 179
+ + K L N VF E A V+ + L D Y + NND+
Sbjct: 506 IILSKIYRLVNSQVFDEIALELVHSCIRSLVDAYRYFSRNNDK 548
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -2
Query: 238 YKSRKKLYD--LYSEKAYNNDET 176
+K+R K +D +YS +YNN+ET
Sbjct: 93 HKTRPKQFDECIYSPYSYNNEET 115
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 527 NQLTSDHSGQFVSFESIMNSKDKNTLVTVPINKKRIEKFRNNIKPRTFRN 378
N + S S FVS S + S K T + + +++EK ++ P+ F N
Sbjct: 221 NSVKSSPSKSFVSISSPVQSTVKPTKASGVVKSEKVEK--RSLPPQDFGN 268
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 472 FIIDSKDTNCPLWSDVN*LIIFLL 543
F + DT CP+W+ + L+IF++
Sbjct: 549 FTVRYYDTQCPVWALIVALLIFIV 572
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -1
Query: 557 NVTPINKKIINQLTSDHSGQFVSFESIMNSKDK 459
NVTP+N+ + + D GQ ++ + D+
Sbjct: 394 NVTPVNENYLQRFFGDQPGQATAYVLFYTAADE 426
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 521 LTSDHSGQFVSFESIMNSKDKNTLVTVPINKKRI 420
LTS +++SFES+ N K++ NKKRI
Sbjct: 422 LTSSLHLKYLSFESLGNLKERYVRQYFLSNKKRI 455
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 8.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 298 PKTVTLKNKTVFSEWATTGVYKSRKKLYDLYSEKAYNNDETFHQYVRNYSKLF-RKVCL 125
P +T NKT FS+W G +Y + E+ N FH+ V K + K+CL
Sbjct: 119 PLNITFLNKTAFSKWNQLGKTYGNINVY--FDEEWLNG---FHEKV--IQKTYDHKLCL 170
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 352 SYQNMFERINMVFTDVFIPKTVTLKNKTVFSEW 254
S+++ FER + PK++T + V SEW
Sbjct: 282 SFRSSFERDRRRQQEFLAPKSLTTLDMAVVSEW 314
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 247 TGVYKSRKKLYDLYSEKAYNN-DETFHQYVRNYSKLFRKVCLAAKSLHLSDLIK 89
TG + + +++ +AY ETF YV+ Y + L + H+ L++
Sbjct: 246 TGQSQDLECFFEITQSRAYQEVQETFEYYVQTYDPNNLLMLLRSHPFHIDTLLQ 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,853
Number of Sequences: 5004
Number of extensions: 49535
Number of successful extensions: 188
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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