Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0442
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28) 33 0.13
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_8711| Best HMM Match : SAP (HMM E-Value=9.2) 30 1.6
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4) 29 3.6
SB_7612| Best HMM Match : Protamine_3 (HMM E-Value=1.2) 28 6.3
SB_48398| Best HMM Match : BBE (HMM E-Value=4.1) 28 6.3
SB_54| Best HMM Match : Actin (HMM E-Value=0) 27 8.4
>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 895
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -2
Query: 376 IYNKNPNLSYQNMFERINMVFTDVFIPKTVTLKNKTVFSEWATTGVYKSRKKLYDLYSEK 197
I + +P +Y N + ++ + F K V K W T G+ +S KK +LY +
Sbjct: 516 IPDDDPCSAYSNFLDTFTTIYNNCFPLKKVKTKKSITRKPWLTKGLLRSIKKKNNLYRQF 575
Query: 196 AYNND-ETFHQYVRNYSKL 143
+ HQY + +KL
Sbjct: 576 LCSPTLRHEHQYKKFRNKL 594
>SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 565
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -2
Query: 376 IYNKNPNLSYQNMFERINMVFTDVFIPKTVTLKNKTVFSEWATTGVYKSRKKLYDLYSEK 197
I + +P +Y N + ++ + F K V K W T G+ +S KK +LY +
Sbjct: 291 IPDDDPCSAYSNFLDTFTTIYNNCFPLKKVKTKKSITRKPWLTKGLLRSIKKKNNLYRQF 350
Query: 196 AYNND-ETFHQYVRNYSKL 143
+ HQY + +KL
Sbjct: 351 LCSPTLRHEHQYKKFRNKL 369
>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1868
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 256 WATTGVYKSRKKLYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHLSDLIK 89
W T V S K+ L+ +ND + ++ +NY+ +V AAK ++ + K
Sbjct: 1176 WLTKAVLNSIKQRQKLFITHFLSNDSSKVRFYKNYNNKLNRVKEAAKKVYFENQFK 1231
>SB_8711| Best HMM Match : SAP (HMM E-Value=9.2)
Length = 125
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = -2
Query: 307 VFIPKTVTLKNKTVFSEWATTGVYKSRKKLYDLYS----EKAYNNDETFHQYVRNYSKLF 140
VF P + KTV S T V+KS L D ++AY + F + R + F
Sbjct: 52 VFEPSSTPTCEKTVLSISELTQVWKSLMVLTDALGANPGDEAYLQADAFQEKARQWGTKF 111
Query: 139 RKVCLAAKSLH 107
RK LH
Sbjct: 112 RKATFDVVILH 122
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 280 KNKTVFSEWATTGVYKSRKKLYDLYSEKAYNNDETFHQYVRNYSKLFRK 134
KNK + E + G+ K KK+ Y K+ +DE FH+ ++N +K
Sbjct: 531 KNKAL--EKSVNGLEKEIKKMEQNYELKSKESDEKFHRELQNTKDRLQK 577
>SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4)
Length = 401
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = -2
Query: 283 LKNKTVFSEWATTGVYKSRKKLYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHL 104
+K K + W TTG+ S LY + + H + Y +++ +A+K +
Sbjct: 21 VKKKFLSKPWITTGIKHSIAIKNKLYKQFLNTQNSFIHNQFKLYRNKLKRLLMASKEKYY 80
Query: 103 SD 98
D
Sbjct: 81 ED 82
>SB_7612| Best HMM Match : Protamine_3 (HMM E-Value=1.2)
Length = 266
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 298 PKTVTLKNKTVFSEWATTGVY 236
P TVTL +K V EWATT ++
Sbjct: 5 PVTVTLLSKLVALEWATTSLH 25
>SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)
Length = 243
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -2
Query: 367 KNPNLSYQNMFERINMVFTDVFIP-KTVTLKN-KTVFSEWATTGVYKSRKKLYDLYSEKA 194
K+ N + + + + + D +P K ++ K K + W TTG+ S LY +
Sbjct: 138 KDVNDYFDSFYASVERII-DKHVPLKKLSRKEIKFLSKPWITTGIKHSIAIKNKLYKQFL 196
Query: 193 YNNDETFHQYVRNYSKLFRKVCLAAKSLHLSD 98
+ H+ + Y +++ +A+K + D
Sbjct: 197 NTQNSFIHKQFKLYRNKLKRLLMASKEKYYED 228
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 530 INQLTSDHSGQFVSFESIMNSKDKNTLVT 444
IN T H+G V +I NS+ N+LVT
Sbjct: 607 INSFTLSHNGSRVVDSTIHNSRSMNSLVT 635
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,358
Number of Sequences: 59808
Number of extensions: 316475
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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