Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0442
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein si... 29 1.7
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 28 3.9
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 28 3.9
At2g45900.1 68415.m05708 expressed protein 28 3.9
At1g20570.1 68414.m02565 tubulin family protein 28 3.9
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 28 5.2
At1g80260.1 68414.m09396 tubulin family protein 28 5.2
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont... 28 5.2
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 27 6.8
At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04... 27 6.8
At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carot... 27 6.8
At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carot... 27 6.8
At1g79680.1 68414.m09293 wall-associated kinase, putative simila... 27 6.8
At5g51800.1 68418.m06423 expressed protein 27 9.0
At3g46260.1 68416.m05007 protein kinase-related contains low sim... 27 9.0
>At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 506
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 415 SLEIILSQEHSEIIYNKNPNLSYQNMFE-RINMVFTDVFIPKTVTLKNKTVFSEWATTGV 239
SL+ +L + SE+I + N L Y+NMF+ +++ ++ + T+K + W T G
Sbjct: 214 SLDYVLFESSSEVI-DPNTGLLYKNMFDAQVDALYYALTALNFRTIKIMVTETGWPTKGS 272
Query: 238 YKSR 227
K +
Sbjct: 273 PKEK 276
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 223 KLYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHLSDLI 92
K + LY+EK++NND Y L K L + DL+
Sbjct: 407 KCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 450
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 223 KLYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHLSDLI 92
K + LY+EK++NND Y L K L + DL+
Sbjct: 411 KCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454
>At2g45900.1 68415.m05708 expressed protein
Length = 720
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 220 LYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHLSDLI 92
L D+ S+ N ++TFH+ ++ K + +AAK HLS+++
Sbjct: 301 LPDIASKGEANKEDTFHESEKDSKKSMCGIYIAAKK-HLSEML 342
>At1g20570.1 68414.m02565 tubulin family protein
Length = 976
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -2
Query: 256 WATTGVYKSRKKLYDLYSEKAYNNDETFHQYV--RNYSKLFRKVCLA-AKSLHLSDLI 92
W G +K + L +K N + FHQYV R Y +R++C A K+ L ++I
Sbjct: 800 WKGKGSATKIRKHHCLLEQKLLNFVDAFHQYVMDRVYHTAWRELCEAMVKAGSLDEVI 857
>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 901
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 358 NLSYQNMFERINMVFTDV-FIPKTVTLKNKTVFSEWATTGVY 236
+LSY+++ + F + P+ +K +T++S WA G+Y
Sbjct: 407 SLSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIY 448
>At1g80260.1 68414.m09396 tubulin family protein
Length = 951
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -2
Query: 256 WATTGVYKSRKKLYDLYSEKAYNNDETFHQYV--RNYSKLFRKVCLA-AKSLHLSDLI 92
W G +K + L +K N + FHQYV R Y +R++C A K+ L ++I
Sbjct: 761 WKGKGSATKIRKHHWLLEQKLLNFVDAFHQYVMDRVYHTAWRELCEAMVKAGSLDEVI 818
>At1g33610.1 68414.m04160 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 907
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3
Query: 168 NMSGTIPNYLEKF 130
N+SGTIPNYL +F
Sbjct: 687 NLSGTIPNYLSRF 699
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 415 SLEIILSQEHSEIIYNKNPNLSYQNMFERI 326
SL + SQ H+ + N NPN S N +R+
Sbjct: 11 SLSLGFSQNHNPLQMNLNPNSSLSNNLQRL 40
>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 623
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 285 VTVLGINTSVKT-ILILSNIFWYDKFGFLL*IISECSWLNIISKLLNSFFINRNSHKSIF 461
V +L + ++VK IL++ + +D +L I+ +CS + + + F +N IF
Sbjct: 204 VWILALKSAVKMGILLMDSEMRFDLTRDILHIVWKCSLDVVWNDMEEEFLLNGLDSLEIF 263
Query: 462 IFRIHNRFK 488
+ N+FK
Sbjct: 264 LVEDANKFK 272
>At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carotene
7,8-desaturase identical to SP|Q38893 Zeta-carotene
desaturase, chloroplast precursor (EC 1.14.99.30)
(Carotene 7,8-desaturase) {Arabidopsis thaliana}
Length = 558
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 578 CLDNIFTNVTPINKKIINQLTSDHSGQFVSFESIMNSKDKNTLVTVPINKKRIEKFRNNI 399
C +N+F + + + N L DH+ F++ + + D V PI+ R N +
Sbjct: 116 CYNNLFRLMKKVGAEK-NLLVKDHTHTFINKDGTIGELDFRFPVGAPIHGIRAFLVTNQL 174
Query: 398 KP 393
KP
Sbjct: 175 KP 176
>At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carotene
7,8-desaturase identical to SP|Q38893 Zeta-carotene
desaturase, chloroplast precursor (EC 1.14.99.30)
(Carotene 7,8-desaturase) {Arabidopsis thaliana}
Length = 558
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 578 CLDNIFTNVTPINKKIINQLTSDHSGQFVSFESIMNSKDKNTLVTVPINKKRIEKFRNNI 399
C +N+F + + + N L DH+ F++ + + D V PI+ R N +
Sbjct: 116 CYNNLFRLMKKVGAEK-NLLVKDHTHTFINKDGTIGELDFRFPVGAPIHGIRAFLVTNQL 174
Query: 398 KP 393
KP
Sbjct: 175 KP 176
>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
to wall-associated kinase 2 GI:4826399 from [Arabidopsis
thaliana]
Length = 769
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 291 VLGINTSVKTILILSNIFWYDKF 359
V+G++TS T++ + I+W KF
Sbjct: 360 VIGLSTSFSTLVFIGGIYWLYKF 382
>At5g51800.1 68418.m06423 expressed protein
Length = 972
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 418 SIRFLLIGTV-TRVFLSLEFIIDSKDTNCPLWSD 516
+I + +IG + +R+ + F+I SKD+ PLW D
Sbjct: 568 AITYDIIGPIMSRLNSNNGFVISSKDSLIPLWDD 601
>At3g46260.1 68416.m05007 protein kinase-related contains low
similarity to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 434
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -1
Query: 557 NVTPINKKIINQLTSDHSGQFVSFESIMNSKDKNTLVTVPINKKRIEKFRNNIKPRTF 384
N+T + KK IN L +GQ + +I +K + TLV K ++ N P +F
Sbjct: 61 NITDVVKKPINTLRYFPTGQTNCYTNIPATKGRTTLVRTKFYYKNYDE---NYSPPSF 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,835,363
Number of Sequences: 28952
Number of extensions: 232812
Number of successful extensions: 631
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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