Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0441
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 222 3e-59
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 85 9e-18
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 33 0.028
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 29 0.35
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 29 0.35
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.5
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 27 2.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.7
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 25 7.5
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 7.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.5
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 9.9
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 25 9.9
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 222 bits (542), Expect = 3e-59
Identities = 105/179 (58%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Frame = +3
Query: 24 LVVIGSGPGGYVAAIKAAEVGMKVVSVEKDPTL*GTCLNVGCIPSKALLHNSHLYHMAKH 203
L VIG GPGGYVAAI+ A++G+K + VEK TL GTCLNVGCIPSKALL+NSH+YH KH
Sbjct: 48 LCVIGGGPGGYVAAIRGAQLGLKTICVEKRGTLGGTCLNVGCIPSKALLNNSHIYHTVKH 107
Query: 204 DFKQRGIETGEVTFDFKKMMEYKANAVKGLTGGIAMLFQKNKVNLVKGVGTIVAPNKVEV 383
D K+RGI+ V+ + +MM+ K ++VK LT GI LF+KNKV KG G+ + P + V
Sbjct: 108 DTKRRGIDVSGVSVNLSQMMKAKDDSVKSLTSGIEYLFKKNKVEYAKGTGSFIDPQTLSV 167
Query: 384 HGEKGV--ETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAG 554
G G +T+ KN +IA+GSEV PFPGVT DEK+I++STGALSL VPKKM V+G G
Sbjct: 168 KGIDGAADQTIKAKNFIIATGSEVKPFPGVTIDEKKIVSSTGALSLSEVPKKMTVLGGG 226
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 84.6 bits (200), Expect = 9e-18
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 7/183 (3%)
Frame = +3
Query: 27 VVIGSGPGGYVAAIKAAEVGMKVVSVEKDPTL*GTCLNVGCIPSKALLHNSHLYHMAKHD 206
+VIG G GG +A +AA+ G KV +E L GTC+N GC+P K + + + L K
Sbjct: 11 LVIGGGSGGLASARRAAKHGAKVALIEASGRLGGTCVNYGCVPKKIMWNIADLVAKMK-T 69
Query: 207 FKQRGIETGEV-TFDFKKMMEYKANAVKGLTGGI-AMLFQKNKVNLVKGVGTIVAPNK-- 374
KQ G ++ +FD+ M++ K +A G GI K+ V + G + V+P +
Sbjct: 70 AKQNGFPNSQLGSFDW-GMIKRKRDAYIGRLNGIYERNVNKDGVAYISGHASFVSPTEVA 128
Query: 375 VEVHGEKGVETVNTKNILIA-SGSEVTP--FPGVTFDEKQIITSTGALSLESVPKKMLVI 545
V+++ G + + K ILIA G + P PG + I S G LES PK++ ++
Sbjct: 129 VDMNDGSGTQVFSAKYILIAVGGHPIWPSHIPGAEYG----IDSDGFFELESQPKRVAIV 184
Query: 546 GAG 554
GAG
Sbjct: 185 GAG 187
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 33.1 bits (72), Expect = 0.028
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -3
Query: 425 NIFGINSLNTLLSVYFNFIWGNYSSYTFDKINLVLLKEHCNTSCEAFNS 279
NI G+ TLLS + ++ NY+ Y+ DKI + KE NT + FNS
Sbjct: 756 NISGLADNYTLLSKHDRAMYNNYADYSPDKIKEIKEKE-LNTYNDYFNS 803
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.35
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 160 FDGIHPTLRQVPHKVGSFSTETTFMPTSAALIAATYP 50
FDG+ L+++P ++ SFST + S L +P
Sbjct: 245 FDGVEYALKKIPLRLRSFSTSSNIFRESRTLARLNHP 281
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 29.5 bits (63), Expect = 0.35
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 24 LVVIGSGPGGYVAAIKAAEVGMKVVSVE 107
+V+IGSGP G+ AAI A +K V E
Sbjct: 6 VVIIGSGPAGHTAAIYLARGELKPVMYE 33
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = -3
Query: 395 LLSVYFNFIWGNYSSYTFDKINLVLLKEHCNTSCEAFNSISFIFHHLFEVKCNFTSFNTP 216
L +V+ I+GNY + + IN LL + N ++ + + F ++CN + FN
Sbjct: 1930 LHAVHNYAIYGNYL-HLEEYINKKLLLINPNEEPDSLLFYALAYDLKFLIRCNQSQFNCD 1988
Query: 215 LLEVM 201
+L+++
Sbjct: 1989 ILQLL 1993
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 18 RILVVIGSGPGGYVAAIKAAEVGMKVVSVEK 110
R + +IGSGP G AA + G VV E+
Sbjct: 1756 RRVAIIGSGPAGLAAADQLNRAGHHVVIYER 1786
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 112 SFSTETTFMPTSAALIAATYPPGPEPIT 29
S S T+ + +SA+++++TY GP IT
Sbjct: 159 SSSMTTSGLSSSASIVSSTYRDGPSIIT 186
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 30 VIGSGPGGYVAAIKAAEVGMKVVSVEKDPTL 122
V+ GPG ++ E KV++VE DP +
Sbjct: 54 VLEVGPGTGNLTVRMLEKARKVIAVEMDPRM 84
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 18 RILVVIGSGPGGYVAAIKAAEVGMK 92
RI+ G+G G AI AA+ GMK
Sbjct: 399 RIIAETGAGQHGVATAICAAKFGMK 423
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 320 LKEHCNTSCEAFNSISFIFHHLFEVKCNFTSFNTPLLE 207
+K+ + ++ SIS ++H L + N S N LLE
Sbjct: 778 MKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLE 815
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 24 LVVIGSGPGGYVAAIKAAEVGMKVVSVEK 110
+VVIG G G AA A+ +G K + K
Sbjct: 19 VVVIGGGHAGVEAAAAASRLGAKTTLLTK 47
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 QEFGTRILVVIGSGPGGYVAAIKAAEVGMKVVS 101
+ + TR LVVIG+G G V A +K++S
Sbjct: 334 KRYHTRPLVVIGAGAGAAVTAAGVLGDMIKIMS 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,036
Number of Sequences: 5004
Number of extensions: 50853
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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