Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0441
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          81   5e-16
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            81   6e-16
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               54   6e-08
SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)              31   0.48 
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             31   0.48 
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               30   1.5  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   1.9  
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)                29   3.4  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_51860| Best HMM Match : ShTK (HMM E-Value=1.5e-09)                  28   5.9  
SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43)             27   7.8  
SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)         27   7.8  
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)                     27   7.8  

>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = +3

Query: 372 KVEVHGEK-GVETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIG 548
           KV V+ +    E + TKNILIA+GSEVTPFPG+  DEK II+STGALSL +VPK +++IG
Sbjct: 59  KVTVYKDDLSTEVIKTKNILIATGSEVTPFPGIEIDEKHIISSTGALSLSTVPKNLVLIG 118

Query: 549 AG 554
           AG
Sbjct: 119 AG 120



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/30 (83%), Positives = 28/30 (93%)
 Frame = +3

Query: 24  LVVIGSGPGGYVAAIKAAEVGMKVVSVEKD 113
           LVVIGSGPGGYVAAIKAA++GMK V+V KD
Sbjct: 37  LVVIGSGPGGYVAAIKAAQLGMK-VTVYKD 65


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 36/58 (62%), Positives = 45/58 (77%)
 Frame = +3

Query: 24  LVVIGSGPGGYVAAIKAAEVGMKVVSVEKDPTL*GTCLNVGCIPSKALLHNSHLYHMA 197
           +++IG GPGGY AAI+A ++G+KV  +E   TL GTCLNVGC+PSKALLH S LY  A
Sbjct: 260 VLIIGGGPGGYNAAIRAGQLGLKVACIEGRETLGGTCLNVGCMPSKALLHASELYEAA 317


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
 Frame = +3

Query: 27  VVIGSGPGGYVAAIKAAEVGMKVVSVEKDPTL*GTCLNVGCIPSKALLHNSHLYHMAKH- 203
           VVIG G GG  +A +AAE G+K V +E    L GTC+NVGC+P KA     H+  +A H 
Sbjct: 54  VVIGGGSGGIASARRAAEFGVKAVVIE-HARLGGTCVNVGCVPKKA-----HVDFVAGHA 107

Query: 204 DFKQRG-IETGEVTFDFKKMM 263
            F   G ++ G+  F  K ++
Sbjct: 108 QFTPDGNVKVGDQLFSGKHIL 128



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 29/79 (36%), Positives = 40/79 (50%)
 Frame = +3

Query: 318 QKNKVNLVKGVGTIVAPNKVEVHGEKGVETVNTKNILIASGSEVTPFPGVTFDEKQIITS 497
           +K  V+ V G         V+V    G +  + K+ILIA+G  V   P +   E  I TS
Sbjct: 96  KKAHVDFVAGHAQFTPDGNVKV----GDQLFSGKHILIATGG-VPSLPSIPGFEHGI-TS 149

Query: 498 TGALSLESVPKKMLVIGAG 554
            G   LE +PKK+ V+GAG
Sbjct: 150 DGFFELEDLPKKVAVVGAG 168


>SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)
          Length = 284

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/29 (48%), Positives = 23/29 (79%)
 Frame = +3

Query: 24  LVVIGSGPGGYVAAIKAAEVGMKVVSVEK 110
           ++VIGSGP G  +A++AA +G +V+ +EK
Sbjct: 63  VLVIGSGPCGLRSALEAALLGAQVMVIEK 91


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/92 (20%), Positives = 38/92 (41%)
 Frame = +3

Query: 276 NAVKGLTGGIAMLFQKNKVNLVKGVGTIVAPNKVEVHGEKGVETVNTKNILIASGSEVTP 455
           N +  L  G  +  ++  V      G  +  + ++   ++G ET+ T    + +      
Sbjct: 686 NHIGSLNWGYRVQLREKSVTYKNAFGEFIDNHTIKATDKRGTETIMTAETFVLAMGLRPR 745

Query: 456 FPGVTFDEKQIITSTGALSLESVPKKMLVIGA 551
           +P +   ++  ITS    SL   P   ++IGA
Sbjct: 746 YPNIPGAKEYGITSDDLFSLPYCPGTTVLIGA 777


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  VVIGSGPGGYVAAIKAAEVGMKVVSVEKDPTL*GTC 134
           VVIGSG GG   A   A+ G K++ +E+     G C
Sbjct: 89  VVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGGCC 124


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 24  LVVIGSGPGGYVAAIKAAEVGMKVVSVEK 110
           ++VIG+GP G   AI+ A +G +VV VEK
Sbjct: 557 VLVIGAGPIGLRTAIEMALLGAQVVVVEK 585


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
 Frame = -1

Query: 466 TPGKGVTSDPEAIRIFLVLTVSTPFSPCTSTLFGATIVP--TPLTRLTLFF*KSIAIPPV 293
           TP K  T+ P A       T +TP +  T T    T  P  T  T+ T     +   P  
Sbjct: 130 TPTKPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKSTTTTPPATTTPTT 189

Query: 292 RPLTALA---LYSIIFLKS 245
           RPL  L     YS++FL S
Sbjct: 190 RPLLLLCSRRTYSVLFLNS 208


>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
          Length = 510

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 365 GNYSSYTFDKINLVLLKEHCNTSC-EAFNSISFIFHHLFE 249
           G  ++Y   ++NL+ L+EH      EAFN   F +H L E
Sbjct: 390 GQATAYMVGQLNLMRLREHARQQLGEAFNLKDFHYHLLKE 429


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 112 SFSTETTFMPTSAALIAATYPPGPEPITTK 23
           S + + T  PT A  IA T PP P+P TT+
Sbjct: 861 STTAQPTQPPTFAPSIAPTQPPTPKPPTTE 890


>SB_51860| Best HMM Match : ShTK (HMM E-Value=1.5e-09)
          Length = 197

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 127 PHKVGSFSTETTFMPTSAALIAATYPPGPEPITTK 23
           P ++     + T  PT A L   T PP P P+  K
Sbjct: 114 PTEISGPGPKETLPPTPATLPPTTVPPAPAPVPDK 148


>SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 135 LNVGCIPSKALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEY 269
           L   C+P   ++  ++ + +AKHD         E TF F K+M +
Sbjct: 124 LQSACVPDHYIVQKNYRFFLAKHDGSLHFAR--EATFAFYKIMSF 166


>SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43)
          Length = 1074

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -3

Query: 422 IFGINSLNTLLSVYFNFIWGN--YSSYTFDKINLVLLKEHCNTSCEAFNSISFI 267
           ++G   L   L + FN IW +        D I  +L K+   T C  +  IS +
Sbjct: 576 VYGGRCLRAFLLILFNIIWASEIIPQVWKDAIITILFKKGDRTECGNYRGISLL 629


>SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
          Length = 683

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -3

Query: 422 IFGINSLNTLLSVYFNFIWGN--YSSYTFDKINLVLLKEHCNTSCEAFNSISFI 267
           ++G   L   L + FN IW +        D I  +L K+   T C  +  IS +
Sbjct: 516 VYGGRCLRAFLLILFNIIWASEIIPQVWKDAIITILFKKGDRTECGNYRGISLL 569


>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
          Length = 687

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 348 VGTIVAPNKVEVHGEKGVETVNTKNILIASGSEVTPFPGVTFDEKQIITST 500
           V + + PN   +   K  +T  T +  +A  + +TP P VT  +  ++TS+
Sbjct: 548 VASFIQPNVTSITTIKIDDTSRTPSASVAFETTITPSPNVTSYQPLLMTSS 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,025,200
Number of Sequences: 59808
Number of extensions: 381740
Number of successful extensions: 3206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3204
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)