Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0440
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    29   0.68 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.6  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   8.4  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 319 LYLLAELKT-ISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMKSV 495
           +++L ELK    +KV      + PP +         PI++D+G+  +E+  I  H+++  
Sbjct: 16  VWMLEELKVPYEIKVYDRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKY 75

Query: 496 PGGHNLFVQDKEVASL 543
             G +    +++VA L
Sbjct: 76  --GPSFKPSEEDVAEL 89


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 598 SVHLCEPAPASVLNTGSRLETRPPCPARI 512
           + H+CE A   V+N   RL    P PA I
Sbjct: 123 ATHMCEQAKCVVVNVDYRLAPEDPFPACI 151



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 104 FQNTDKLPYFRLVISRRSNLAKSR*VSNPRA 12
           F+NT +LP  +++  RR  L   +  SNP A
Sbjct: 229 FENTPQLPAAKMMWYRRHYLPNEKDWSNPEA 259


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 463 EKIERHIMKSVPGGHNLFVQDKEVASLIENLYSKLKLVL 579
           +KIERHI  S+     L + D     ++E+L++ L  V+
Sbjct: 67  KKIERHIYISLNSIQLLAINDALSPDILESLFNSLNAVI 105


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 55  GATWQKVGRYQTLVPNSC 2
           G  W K+GR    +PN C
Sbjct: 332 GKCWTKIGRKMARMPNDC 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,895
Number of Sequences: 5004
Number of extensions: 54841
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)