Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0440
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1325 - 26146775-26147247,26147397-26148579                       29   2.8  
09_03_0110 + 12432562-12432801,12432811-12433419                       28   4.9  
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    28   4.9  
01_01_1008 - 7987936-7988628,7988923-7989102                           28   6.5  
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     27   8.6  
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014...    27   8.6  

>08_02_1325 - 26146775-26147247,26147397-26148579
          Length = 551

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 176 ETLEFSQGSTPGVPLLHNITQATRFQNT 93
           E L++SQGS P  P+  N  +A RFQ++
Sbjct: 418 EILDYSQGSGPSSPVGTNTYKADRFQDS 445


>09_03_0110 + 12432562-12432801,12432811-12433419
          Length = 282

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = -3

Query: 278 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 180
           R+PS+   ++++   IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159


>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +1

Query: 106 RVACVILCNRGTPGVLPWLNSSVS*ITMSDEIAENGTANGDVPEIELIIKASTIDGRRK 282
           R+A       GTP   PW   S++ +  S EI  N  A   V   + I+KA T +G+ K
Sbjct: 50  RLAAATALRDGTPIKQPWFCESITLVGASREILIN-VAWKKVISNDKILKAMTSNGKLK 107


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 381 AAPRFPHQLRSDTPAHTDRQ--WAGDT*ERENRTAHHEVRARWTQPIRAGQGGRVSNREP 554
           A+ R P Q  + T A   R    AG+       TA  ++R RWT+    G  GR  +R P
Sbjct: 171 ASNRSPLQGLTRTTAEATRSAVLAGEMPSSAANTATDKLRRRWTETDVGGGLGRRCSRSP 230

Query: 555 VFKTEAGAGSQR 590
            ++    A  +R
Sbjct: 231 WWRRRGEARVRR 242


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 441 IVDQYGRVCRFEVGAEIWGRLLHVH 367
           ++ + G+ C +E+ AE+WG L+ VH
Sbjct: 531 LIKKEGQACLWEILAEVWGHLI-VH 554


>03_02_0712 -
           10600147-10600196,10600257-10600378,10600993-10601489,
           10601663-10601851,10601936-10602099,10602193-10602446,
           10602535-10602691,10602830-10602995,10603121-10603227,
           10603305-10603478,10603594-10603689,10603781-10603862,
           10603948-10604058,10604253-10604309,10604638-10604709,
           10604799-10605041,10605195-10605341,10605381-10605616,
           10605745-10605865
          Length = 1014

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 163 NSSVS*ITMSDEIAENGTANGDVPEIELIIKASTID 270
           N  V  + ++DEI  N     +VP+  L+  AST+D
Sbjct: 527 NEQVRDLLVNDEIRNNSQNGLNVPDASLVCVASTMD 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,237
Number of Sequences: 37544
Number of extensions: 400034
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)