Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0440
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7) 42 4e-04
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016) 31 0.93
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29) 30 1.2
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 29 2.2
SB_27816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05) 29 3.8
SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3) 28 6.6
SB_9469| Best HMM Match : IRK (HMM E-Value=0) 28 6.6
SB_14261| Best HMM Match : ig (HMM E-Value=0) 28 6.6
SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40) 27 8.7
SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6) 27 8.7
>SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7)
Length = 253
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +1
Query: 217 ANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDF 396
A +P +EL +KAST+D + GA + C M + LK + +K VD K +
Sbjct: 2 AEETIPGVELFVKASTLDCQSLGADIQCHRIMM----MFALKGLPIKTFNVDTIK-KTNV 56
Query: 397 RTNFE-ATHPPILIDNGLAILEN-EKIERHIMK 489
+ +F P + +DNG +L++ ++IER K
Sbjct: 57 QLHFPYKNFPTLTLDNGAEVLDDLDEIERRFEK 89
>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
Length = 800
Score = 30.7 bits (66), Expect = 0.93
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = -3
Query: 380 FCMSTVVTFKLIVLSSANRYRSMKYS*QNRQAPF-RLPSIVDA--FIISSISGTSPLAVP 210
FC VV LI L+ ++RY M +PF LPS + + +S+ G+ + P
Sbjct: 271 FCEDRVVNEHLIALAKSDRYLRMPLP----LSPFLTLPSPISSPEHRMSTGGGSEIMRSP 326
Query: 209 FSAISSDIVI*ETLEFSQGSTPGVPLLHNITQATRFQ 99
F A + DI I E ++F++ S + L + +FQ
Sbjct: 327 FQAEAKDITIAE-IDFTKLSPDIIQLASLVNLNLKFQ 362
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 308 YS*QNRQAPFRLPSIVDAFIISSISGTSPLAVPFSAISSDI 186
+S Q APF LPS +F SS PL+ FS S+DI
Sbjct: 2922 HSTQPANAPFTLPSTSRSFNTSSPPSPKPLSSYFSRSSTDI 2962
>SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29)
Length = 438
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -3
Query: 425 GGCVASKLVRKSGGGFCMSTVVTFKL--IVLSSANRYRSMKYS*QNRQAPFRLPSIVDAF 252
GGC A +L + G + +TVVT KL I+ SSA R++ + Q+ + R+
Sbjct: 212 GGCAARRLSWEFYGNYDNNTVVTHKLTPIISSSAIRFQPRQ---QHSRVAMRVEIYTYGI 268
Query: 251 IISSISGTSPLAVPFSAISS 192
+ S G + VP I+S
Sbjct: 269 ALPSDLGIASGEVPDDKITS 288
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 340 KTISLKVTTVDM-QKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMK 489
+T SL T+ + Q P +FR H +L+ N + +++NEK+ + + K
Sbjct: 3896 ETFSLTDETIAIRQLTPVEFRVLHLLIHSLLLMGNAINLIDNEKLAKFLFK 3946
>SB_27816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 275 LPSIVDAFI--ISSISGTSPLAVPFSAISSDIVI*ETLEFSQGSTPGVPLL 129
LP + FI + ++SGT+ V F + + I I ++ S +PG PL+
Sbjct: 52 LPKYLHTFIRSVQAVSGTAVSGVDFEPLQTTINIPPSVSTSNSCSPGDPLV 102
>SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 281 FRLPSIVDAFIISSISGTSPLAVPFSAISSDIVI*ETLEFSQGSTPGVP 135
FR+ S++ + S + G F AI ++ + L SQGS PG+P
Sbjct: 173 FRMQSVIG--LSSVVDGCDANQQRFLAIDGPAIMVQVLTCSQGSLPGLP 219
>SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05)
Length = 922
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = -2
Query: 315 HEVFLTEQTGALSSSIDRRCLYYKLDLRNVSISCTIFCDFIRHRDLGNT*IQPGKYPGST 136
H+ + A + D CLY L++ ++ + F + GNT +QP P ++
Sbjct: 765 HQADAAKNDIAAAGETDLLCLYK--GLKDETLDSLRYARFCQKISTGNTQVQPESLPPTS 822
Query: 135 SITQYHT 115
+ YH+
Sbjct: 823 AAAIYHS 829
>SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)
Length = 451
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = -3
Query: 290 QAPFRLPSIVDAFIISS-ISGTSPLAVPFSAIS-----SDIVI*ETLEFSQGSTPGVPLL 129
QA P++V + + +SG P A+ ++ ++ + I + + ++ PGVPL
Sbjct: 21 QASQTRPTVVPSTLFQGQLSGNMPWAIQYATLNPQMTANPITVGPNVPYAVIPNPGVPLG 80
Query: 128 HNITQATRFQNTDKLPYF 75
+N + + LP+F
Sbjct: 81 NNFSSVMPSTMSPSLPFF 98
>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
Length = 520
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -3
Query: 422 GCVASKLVRKSGGGFCMSTVVTFKLIVLSSANRYRSMKYS*QNRQAPFRLPSIVDAFIIS 243
GCV + GG +C+ V +F L S ++ Y RQ P + I
Sbjct: 151 GCVWYLITYLRGGNYCVHNVESFVTAFLFSLETQTTIGYG--GRQISGECPEAIILLNIQ 208
Query: 242 SISG 231
S+SG
Sbjct: 209 SLSG 212
>SB_14261| Best HMM Match : ig (HMM E-Value=0)
Length = 1337
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 286 ACLFCQEYFMDLYLLAELKTISLKV 360
ACL+ QEYF D+ LL + I+ +V
Sbjct: 1264 ACLWRQEYFNDILLLTDNNPITTRV 1288
>SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)
Length = 1002
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 445 LAILENEKIERHIMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDE 594
L+ + +E + RH+ K +P N + + S E L S KLVL +D+
Sbjct: 549 LSAVADESLTRHLNKILPALLNAMQESQGTESHEEELESAKKLVLSVEDD 598
>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
Length = 433
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 181 FRKHLNSAREVPREYLYYTISHKQHGSKTQT 89
+ + S E P+ Y I K+HGSK +T
Sbjct: 303 YENQMLSCEETPQSPFCYGIGKKRHGSKNET 333
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,305,518
Number of Sequences: 59808
Number of extensions: 455853
Number of successful extensions: 1055
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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