Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0440
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    31   0.44 
At4g23740.1 68417.m03415 leucine-rich repeat transmembrane prote...    30   1.3  
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    29   3.1  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    29   3.1  
At1g10190.1 68414.m01149 expressed protein similar to hypothetic...    29   3.1  
At5g16710.1 68418.m01956 dehydroascorbate reductase, putative St...    28   4.1  
At4g15050.1 68417.m02311 expressed protein  contains Pfam profil...    28   4.1  
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro...    28   5.4  
At4g17780.1 68417.m02653 F-box family protein contains F-box dom...    27   7.2  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    27   7.2  
At1g60030.1 68414.m06763 xanthine/uracil permease family protein...    27   9.5  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 304 EYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKIE-RH 480
           +Y MD+Y  A  + I+ K TT+++ K   + +   E     +  +  +AI ENEK + R 
Sbjct: 300 KYTMDMYNSACKEAIAAKKTTIELHKWKEERKHKLE--EAILAKEAAMAIAENEKAKSRA 357

Query: 481 IMKSVPGGHNLFVQDKEVASLIE 549
            M+++   H +   + +    IE
Sbjct: 358 AMEALEAAHRMAETEAQKRKQIE 380


>At4g23740.1 68417.m03415 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase -
           Arabidopsis thaliana RKL1, PID:g4008006
          Length = 638

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 100 WNRVACVILCNRGTPGVLPWLNSSVS*ITMSDEI-AENGTANGDVPEIELIIKASTID 270
           W  +  V L N G  G +P   SS+S +     +   N T +GD+P++ ++     ID
Sbjct: 140 WKNLTSVNLSNNGFNGTIP---SSLSRLKRIQSLNLANNTLSGDIPDLSVLSSLQHID 194


>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 199

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 268 DGRRKGACLFCQEYFMD-LYLLAELKTISL 354
           +GRR+GAC++C   F++ LY   EL    L
Sbjct: 24  EGRREGACIYCGNTFLERLYENVELSPFDL 53


>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 291 TGALSSSIDRRC---LYYKLDLRNVSISCTIFC 202
           T  + S  + RC   +Y+K+D+RNV  SC + C
Sbjct: 566 TRPVCSRCEDRCQGSIYFKVDVRNVCASCLLKC 598


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 289 CLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILI 435
           C  C EY MD Y        ++ V+   ++KPPP    +    H   LI
Sbjct: 278 CYCCDEYLMDYYYYCSSCDFAMNVSC--LEKPPPVLSIDHPKWHQHPLI 324


>At1g10190.1 68414.m01149 expressed protein similar to hypothetical
           protein GB:CAB10284 contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 396

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 383 RPQISAPTSKRHTRPY*STMGWRYLRTRKSNGTS 484
           +P    P+ K HT  Y     W+ +R RK+N T+
Sbjct: 69  QPAFDHPSMKNHTYHYKMRPIWKRMRERKTNNTN 102


>At5g16710.1 68418.m01956 dehydroascorbate reductase, putative
           Strong similarity to dehydroascorbate reductase
           [Spinacia oleracea] gi:10952512 gb:AAG24945
          Length = 258

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 238 IELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDF 396
           +E+ +KAS     + G C FCQ+    + L  E K +   +  VD+   P  F
Sbjct: 49  LEICVKASITTPNKLGDCPFCQK----VLLTMEEKNVPYDMKMVDLSNKPEWF 97


>At4g15050.1 68417.m02311 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 396

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 383 RPQISAPTSKRHTRPY*STMGWRYLRTRKSNGTS 484
           +P    P+ K HT  Y     W+ +R RK+N T+
Sbjct: 69  QPAFDHPSMKNHTYHYKMRPIWKGMRERKTNNTN 102


>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
           protein low similarity to SP:P80728 Mavicyanin
           {Cucurbita pepo}; contains Pfam profile PF02298:
           Plastocyanin-like domain
          Length = 163

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 337 LKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGL 447
           LK + L +T   + +PPP   TNF +T  P++  N +
Sbjct: 115 LKGMKLAITV--LPQPPPSAPTNFTSTTTPLIPPNAI 149


>At4g17780.1 68417.m02653 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 347

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +3

Query: 465 ENRTAHHEVRARWTQPIRAGQGGRV---SNREPVFKTE 569
           ENR A  E R RW  P+   + G +    N + +FK +
Sbjct: 296 ENRVASRERRNRWFTPVSVSKQGNIVFYDNHKRLFKNQ 333


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 283 GACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPIL 432
           G C  CQ+ F D+Y    +   SL  T     KPPP   T+ + +H  IL
Sbjct: 223 GKCKCCQKRFEDIYYHCSVCNFSLNFTCT--IKPPPLTITHLK-SHSHIL 269


>At1g60030.1 68414.m06763 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 538

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 121 SHKQHGSKTQTNCPTSD*SLVVGATWQKV 35
           ++K  G  TQT+C T    L+ G+ W +V
Sbjct: 250 AYKNTGVNTQTSCRTDRSGLISGSPWIRV 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,663
Number of Sequences: 28952
Number of extensions: 302705
Number of successful extensions: 671
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)