Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0439
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47... 90 1e-18
07_03_0370 - 17366063-17366197,17367445-17367483,17367930-173680... 76 3e-14
11_08_0073 - 28155156-28155296,28155422-28155682,28155858-281559... 44 1e-04
04_04_0566 + 26273708-26273805,26274855-26274983,26275581-262756... 33 0.14
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 31 0.55
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 30 1.3
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 28 5.1
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 6.8
07_01_0463 + 3502708-3503535 27 8.9
>03_01_0057 +
476172-476283,476337-476449,476532-476634,477089-477210,
477303-477497,477627-477701,478082-478179,478328-478421
Length = 303
Score = 89.8 bits (213), Expect = 1e-18
Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 12/96 (12%)
Frame = +2
Query: 101 PERNPKEMVNEWSHKLRKEGYNLDRQVRA------------IQREEEKIKRSLKEAATKN 244
P+ P++ + EW +LR EG N+DRQ+RA +QREE+K+++S++EAA +N
Sbjct: 10 PKPTPQQQLREWQRRLRNEGRNIDRQIRAMMLMVESGASADVQREEKKVEKSIREAAKRN 69
Query: 245 DKQVCTILAKEIIRSRKAINKIYTSKAHLNSVQLQM 352
D LAKE++RSRKA+N++Y +KA LNS+ + +
Sbjct: 70 DIGSAKALAKEVVRSRKAVNRLYENKAQLNSISMHL 105
>07_03_0370 -
17366063-17366197,17367445-17367483,17367930-17368001,
17368287-17368478,17368660-17368781,17369394-17369496,
17370786-17370836,17371199-17371275,17371646-17371757
Length = 300
Score = 75.8 bits (178), Expect = 3e-14
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 17/101 (16%)
Frame = +2
Query: 101 PERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTI----- 265
P P++ + EW KLR E LDRQ+R +QREE+ +++S++EAA +ND +
Sbjct: 10 PRPTPQQQLREWQRKLRNECRVLDRQIRDVQREEKNVEKSIREAAKRNDIGSAKLLSNYE 69
Query: 266 ------------LAKEIIRSRKAINKIYTSKAHLNSVQLQM 352
LAKE++RSR+A+N++Y +KA LNSV + +
Sbjct: 70 QRTLLVLYPTMALAKELVRSRRAVNRLYENKAQLNSVSMHL 110
>11_08_0073 -
28155156-28155296,28155422-28155682,28155858-28155962,
28156563-28156693,28156905-28156941
Length = 224
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Frame = +2
Query: 146 LRKEGYNLDRQVRAIQRE-------EEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAIN 304
LR+ LD+ +R I+RE E+K+ +K+ A + I+AK++IR+R I
Sbjct: 15 LRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMAKDLIRTRHQIT 74
Query: 305 KIYTSKAHLNSVQLQMK 355
K Y K+ L V L+++
Sbjct: 75 KFYALKSQLQGVSLRIQ 91
>04_04_0566 +
26273708-26273805,26274855-26274983,26275581-26275685,
26275794-26275869,26276437-26276511,26276638-26276740,
26276879-26277008,26277266-26277363,26277920-26277996,
26278262-26278375,26278984-26279103,26279533-26279661,
26279946-26280024,26280757-26280875
Length = 483
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -2
Query: 294 FLDLMISFASIVHTCL-SFLVAASFSDRLIFSSSLWIALTCLSKLYPSLRSLCDHSFTIS 118
FL + F + L F+ S + L+F++ + CL + PSLR L T++
Sbjct: 342 FLGAIFCFGAFCFKSLYGFIPFFSVGELLVFATQAPVNYVCLHCVKPSLRPLSMAMSTVA 401
Query: 117 LGLRSGDLPKSPIFAI 70
+ + GD+P SP+ +
Sbjct: 402 IHI-FGDVPSSPLVGL 416
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 125 VNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAIN 304
+N++ KL ++ L+ +V+ I + +K K L E KQ+ + + KEI KAI+
Sbjct: 359 LNKYPSKLHEKLAALEGRVQKIATDIKKTKEMLDENNPDEPKQILSNIQKEITAIEKAIS 418
Query: 305 KI 310
+
Sbjct: 419 HV 420
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Frame = +2
Query: 116 KEMVNEW---SHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIR 286
++ + +W ++ RKE ++ +++V +++E +K SLKEA ND+ CT+L E+
Sbjct: 482 RDTIKKWKDVANDSRKELHDKEKEVLDLRQEVLGLKLSLKEA---NDQ--CTLLFNEV-- 534
Query: 287 SRKAINKIYTSKAHLNSVQLQM 352
+KA T +A L S L +
Sbjct: 535 -QKAWRVSSTLQADLKSENLML 555
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +2
Query: 143 KLRKEGYNLDRQVRAIQREE---EKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIY 313
+++K N D V + +E E+IKR ++ K ++ +C IL++E ++ +
Sbjct: 179 RVKKVKKNEDMAVEIFKNQETKIEQIKRKEQDKHGKEEQNLCKILSEEEQWAKNERLFLE 238
Query: 314 TSKAHLNSVQLQMKNQLG*FDNXXXXXXXXRCVDELTAH 430
+ + +N + +M+N DN +DE+ H
Sbjct: 239 SYEEEINLIN-EMENIENEIDNAEQYNDFINTLDEVGLH 276
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 170 DRQVRAIQREEEKIK-RSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSK 322
DR R + K+K R +E+ KN ++C +EII S++ I Y+S+
Sbjct: 241 DRSSRKVPPRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFSNYSSR 292
>07_01_0463 + 3502708-3503535
Length = 275
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 197 EEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSKAHLNSVQLQMKNQL 364
EEE+ K+ K+ K DK+ AK + K KI +A + Q+K QL
Sbjct: 162 EEEEGKKKEKKKKDKGDKEKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQL 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,834
Number of Sequences: 37544
Number of extensions: 281172
Number of successful extensions: 766
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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