Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0439
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8674| Best HMM Match : SNF7 (HMM E-Value=0.18)                      87   8e-18
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_33265| Best HMM Match : PCI (HMM E-Value=0.0037)                    33   0.24 
SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)                   33   0.24 
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_23112| Best HMM Match : Dickkopf_N (HMM E-Value=2.6)                29   2.3  
SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)              29   2.3  
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)                    29   2.3  
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 29   3.0  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   29   4.0  
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    28   6.9  
SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06)              28   6.9  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)                 27   9.1  
SB_28259| Best HMM Match : Filament (HMM E-Value=0.2)                  27   9.1  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               27   9.1  

>SB_8674| Best HMM Match : SNF7 (HMM E-Value=0.18)
          Length = 115

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 39/54 (72%), Positives = 49/54 (90%)
 Frame = +2

Query: 206 KIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSKAHLNSVQLQMKNQLG 367
           K+KRS+K+AA + DK VC ILAKEII+SRKA+NK+Y+SKA LNSV++QMKNQLG
Sbjct: 2   KVKRSIKDAAKRGDKDVCNILAKEIIQSRKAVNKMYSSKAQLNSVEMQMKNQLG 55


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/90 (27%), Positives = 54/90 (60%)
 Frame = +2

Query: 86  LFGKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTI 265
           LFG+  ++ P+EM+ +    L +   +LDR+   ++++E+KI   +K+ A         I
Sbjct: 6   LFGR--KKTPEEMLKQNQRALNRAMRDLDRERSKMEQQEKKIINDIKKMAKMGQMDAVRI 63

Query: 266 LAKEIIRSRKAINKIYTSKAHLNSVQLQMK 355
           +AK+++R+R+ + K    KA++ +V L+++
Sbjct: 64  MAKDLVRTRRYVKKFILMKANIQAVSLKIQ 93


>SB_33265| Best HMM Match : PCI (HMM E-Value=0.0037)
          Length = 96

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 83  GLFGKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREE 202
           G+   S  ++P E++NEWSH L      L+R    I +EE
Sbjct: 50  GIVTFSSNKSPNEILNEWSHNLTTLMQLLNRTTHLITKEE 89


>SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)
          Length = 451

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 83  GLFGKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREE 202
           G+   S  ++P E++NEWSH L      L+R    I +EE
Sbjct: 405 GIVTFSSNKSPNEILNEWSHNLTTLMQLLNRTTHLITKEE 444


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
 Frame = +2

Query: 113 PKEMVNEWSHKLRKEG---YNLDRQVRAIQREEEKIKRSLK---EAATKNDKQVCTILAK 274
           P+E V+  S +LRKE    +  +R++R IQ++EEKIKR  +       + ++++     +
Sbjct: 287 PEERVS--SFQLRKEDEIRHEAERKLREIQQQEEKIKRDAEIRLALYRQREQRIKEEAQR 344

Query: 275 EIIRSRKAINKIYTSKAHLNSVQLQMKNQL 364
            I+  R+ + +I    A     Q + + +L
Sbjct: 345 RILEDRREVEEIEQQAAEQLKGQQEKEEEL 374


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 12/43 (27%), Positives = 29/43 (67%)
 Frame = +2

Query: 146  LRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAK 274
            L  E  +L  ++  +QRE E +K++++E + KN+++V  ++++
Sbjct: 1250 LGTEVQSLQTRISELQRENENLKQTIQETSDKNERRVEELISE 1292


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 83  GLFGKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKN 244
           G + KS ER+   M N+     +KEGYN + ++  +Q+   K+   L+E  T N
Sbjct: 694 GSYHKSQERS---MSNDLPDFFQKEGYNTNVKLENLQKSATKLFSYLQEQITNN 744


>SB_46937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/76 (21%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
 Frame = +2

Query: 143 KLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKND---KQVCTILAKEIIRSRKAINKIY 313
           +LR E   +  +V +++ E+ +++ S++E  +  +   KQV  +  ++++   K ++K+ 
Sbjct: 434 RLRGEEERMAHKVESLESEKSQLQGSVQENRSILEDYKKQVSPVSVEQVVAQEKDLSKLQ 493

Query: 314 TSKAHLNSVQLQMKNQ 361
           T  +   S+  + +NQ
Sbjct: 494 TELSRQKSLVEEFRNQ 509


>SB_23112| Best HMM Match : Dickkopf_N (HMM E-Value=2.6)
          Length = 249

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = +2

Query: 104 ERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEII 283
           ++NP +       +  K  Y   ++     REEEK K ++  A    DKQ       + I
Sbjct: 24  DKNPDKRAQIEKRRASKRSYIQKKRANTTFREEEKEKANISVAYNSPDKQ-------DQI 76

Query: 284 RSRKAINKIYTSKAHLN 334
             R+A  + Y  K   N
Sbjct: 77  EKRRASKRAYMQKRRAN 93


>SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)
          Length = 488

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 173 RQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSKAH 328
           R+ R   R+ +  K+S  +   K DKQ      K+  R R+A  K  TSK H
Sbjct: 120 REARKASRKTKTSKKSKPQDQDKQDKQDQDKQDKQAARPRQASCKTKTSKLH 171


>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
          Length = 334

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 146 LRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCT--ILAKEIIRSRKAINKIY-T 316
           L+ E  NL++ +  ++ E + ++R +KE   +ND+   T   L  E+ R +  +  ++  
Sbjct: 55  LKAENSNLEKIIIILKTENQTLQRKMKELEYQNDRFKVTQNQLKTELKREKDMVKYLHGL 114

Query: 317 SKAHLNSVQ 343
           +K H  ++Q
Sbjct: 115 AKKHERTIQ 123


>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 324 ALLVYILLIAFLDLMISFASIVHTCLSFLVAASFSDRLIFSSS 196
           A LVY++LI    LM++   +V TCL +   +S    LIF+ S
Sbjct: 287 AHLVYVVLIGSSTLMVNILVVVVTCLIWTQNSSPDMILIFNMS 329


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +2

Query: 116 KEMVNEWSHK--LRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIRS 289
           +E   E +H+  LRKE    + + R I+ EEE+ +++LKE   +  ++   + A+  +  
Sbjct: 160 EEKARELAHQEMLRKEQEQQEEEERRIREEEER-QKALKEERMRKLQEEARLAAQRALEE 218

Query: 290 RKAINK 307
           ++ + +
Sbjct: 219 KRKLEE 224


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 188 IQREEEKIKRSLKEAATKNDKQ 253
           I+RE+EKI R L+EAA + +++
Sbjct: 439 IRREQEKIDRELEEAARREEEE 460


>SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06)
          Length = 418

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 107 RNPKEMVNEWSHKL--RKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQ 253
           R+PK+    W+HK+  +KE  N    + A     E+++  + E + K+DK+
Sbjct: 11  RSPKKF--SWNHKMVKKKEKKNKLAALAAAVEAAEEVENKMDEMSVKDDKR 59


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +2

Query: 119 EMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAK----EIIR 286
           +  +E S  ++     L+ +  +++ E  +++  L  +  K D+ +     K    E++R
Sbjct: 584 QRTSENSQSMQDRILKLEEERNSLEVEVSRLRSELVSSKLKADEDLMNAKTKLKQEELVR 643

Query: 287 SRKAINKIYTSKAHLNSVQLQMKNQ 361
           SR+   +I+  +     +QLQ   Q
Sbjct: 644 SRQYDERIHLLQTSFEELQLQSTKQ 668


>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
          Length = 458

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 146 LRKEGYNLDRQVRAIQREEEKIKRSLKEAATK 241
           LRKE  ++ RQV+ ++ E++ +++S+ +   K
Sbjct: 174 LRKENLHVKRQVKDLEMEKQSLEKSVSDLREK 205


>SB_28259| Best HMM Match : Filament (HMM E-Value=0.2)
          Length = 349

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +2

Query: 143 KLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSK 322
           KL ++   LD  +R   +  EK + SL+   T+N     TIL  E+  +RKA+N + T  
Sbjct: 14  KLSEQQEKLDSNIR---QSTEK-RHSLERITTEN-----TILQNEVKATRKALNDVRTKY 64

Query: 323 AHLNSVQLQMKNQL 364
             L +   ++  QL
Sbjct: 65  EALVTEMRELNLQL 78


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 98  SPERNPKEMVNEWSHKLRKEGYNLDR----QVRAIQREEEKIKRSLKE 229
           SP +  +E ++EW  + +K    LDR      R   R+  + K++LKE
Sbjct: 225 SPSKKKREKMDEWKERQKKIDEKLDRLREKLKRVKSRDRIRDKKTLKE 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,022,596
Number of Sequences: 59808
Number of extensions: 338891
Number of successful extensions: 914
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)