Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0439
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22950.1 68418.m02683 SNF7 family protein contains Pfam domai... 91 7e-19
At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profi... 51 7e-07
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai... 44 1e-04
At2g22730.1 68415.m02694 transporter-related low similarity to s... 34 0.086
At5g65687.1 68418.m08267 transporter-related low similarity to s... 33 0.15
At5g64500.1 68418.m08103 membrane protein-related contains weak ... 31 0.46
At1g68790.1 68414.m07863 expressed protein 31 0.46
At5g35550.1 68418.m04229 myb family transcription factor (MYB123... 31 0.61
At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein... 31 0.61
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 30 1.1
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 30 1.1
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 29 1.9
At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR ... 29 2.4
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 29 3.2
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 29 3.2
At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE... 28 4.3
At2g37970.1 68415.m04660 SOUL heme-binding family protein weak s... 28 5.7
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 27 7.5
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 27 7.5
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai... 27 9.9
At1g20590.1 68414.m02571 cyclin, putative similar to SP|Q40671 G... 27 9.9
>At5g22950.1 68418.m02683 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 229
Score = 90.6 bits (215), Expect = 7e-19
Identities = 35/84 (41%), Positives = 62/84 (73%)
Frame = +2
Query: 101 PERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEI 280
P+ +PK+++ +W KLR+E N++RQ+R IQ+EE +++++KEAA +ND LAKEI
Sbjct: 10 PKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEI 69
Query: 281 IRSRKAINKIYTSKAHLNSVQLQM 352
+ SR+ +N++Y +KA +NS+ + +
Sbjct: 70 VSSRRTVNRLYENKAQMNSISMHL 93
>At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profile
PF03357: SNF7 family
Length = 200
Score = 50.8 bits (116), Expect = 7e-07
Identities = 18/55 (32%), Positives = 37/55 (67%)
Frame = +2
Query: 188 IQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSKAHLNSVQLQM 352
I+REE + +++K++ +ND LA+EI+ SR+ + ++Y +KA +NS+ + +
Sbjct: 10 IEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHL 64
>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 225
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Frame = +2
Query: 146 LRKEGYNLDRQVRAIQRE-------EEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAIN 304
LR+ LD+ +R I+RE E+K+ +K+ A + ++AK++IR+R I
Sbjct: 16 LRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIE 75
Query: 305 KIYTSKAHLNSVQLQMK 355
K Y K+ L V L+++
Sbjct: 76 KFYKLKSQLQGVSLRIQ 92
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 33.9 bits (74), Expect = 0.086
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -2
Query: 294 FLDLMISFASIVHTCL-SFLVAASFSDRLIFSSSLWIALTCLSKLYPSLRSLCDHSFTIS 118
FL + F + L F+ + + L+F++ + CL + PSLR L T++
Sbjct: 375 FLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVA 434
Query: 117 LGLRSGDLPKSPIFAI 70
+ + GD+P SP+ I
Sbjct: 435 IHI-FGDVPSSPLVGI 449
>At5g65687.1 68418.m08267 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003976, GI:12003972, GI:12003974,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 492
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = -2
Query: 270 ASIVHTCLSFLVAASFSDRLIFSSSLWIALTCLSKLYPSLRSLCDHSFTISLGLRSGDLP 91
A ++ +F+ + + LIF+ + CL + P+LR L S T+ + + GD+P
Sbjct: 365 AFLMKNMYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHI-LGDVP 423
Query: 90 KSPIF 76
SP++
Sbjct: 424 SSPLY 428
>At5g64500.1 68418.m08103 membrane protein-related contains weak
similarity to spinster type IV (GI:12003976) [Drosophila
melanogaster]
Length = 484
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -2
Query: 294 FLDLMISFASIVHTCL-SFLVAASFSDRLIFSSSLWIALTCLSKLYPSLRSLCDHSFTIS 118
F+ + FA+ + +FL + + L+F++ + L + PSLR L T+S
Sbjct: 350 FIGAIFCFAAFCFKSMYAFLALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVS 409
Query: 117 LGLRSGDLPKSPIFAI 70
+ + GD+P SP+ +
Sbjct: 410 IHI-FGDVPSSPLVGV 424
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 116 KEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRK 295
+E + EW KL E L R+I EE++ + + K +K + + K + +
Sbjct: 240 REDLQEWEKKLTLEEDRLSEVKRSINHREERVMEN-ERTIEKKEKILENLQQKISVAKSE 298
Query: 296 AINKIYTSKAHLNSVQLQMKN 358
K + K LN + L+ K+
Sbjct: 299 LTEKEESIKIKLNDISLKEKD 319
>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 258
Score = 31.1 bits (67), Expect = 0.61
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = +2
Query: 92 GKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILA 271
G+ P R E+ N W+ LRK R + ++ ++IK S T N+ VC I
Sbjct: 96 GRLPGRTDNEIKNHWNSNLRK------RLPKTQTKQPKRIKHS-----TNNENNVCVIRT 144
Query: 272 KEIIRSRKAINKIYTSKAHLNSVQLQMKNQ 361
K I S+ + + + ++ L +K Q
Sbjct: 145 KAIRCSKTLLFSDLSLQKKSSTSPLPLKEQ 174
>At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein
contains Pfam profile PF00488: MutS domain V
Length = 857
Score = 31.1 bits (67), Expect = 0.61
Identities = 14/48 (29%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +2
Query: 116 KEMVNEWSHKLRKEGYNLDRQVRA-IQREEEKIKRSLKEAATKNDKQV 256
++++N + H+L E ++LD++ RA +++E +K++ L A +K ++ V
Sbjct: 617 RDLMNLY-HELEHESHDLDKRERALLKKETQKVQEDLNSAKSKMERLV 663
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 116 KEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATK 241
+E +NEW KL+ + ++ Q R + + EEK+ K+ K
Sbjct: 262 REYLNEWEKKLQGKEESITEQKRNLNQREEKVNEIEKKLKLK 303
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 116 KEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATK 241
+E +NEW KL+ + ++ Q R + + EEK+ K+ K
Sbjct: 275 REYLNEWEKKLQGKEESITEQKRNLNQREEKVNEIEKKLKLK 316
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator of
chromosome condensation (RCC1) family protein similar to
zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 143 KLRKEGYNLDRQVRAIQREEEKIKRSLKEA-ATKNDKQVCTILAKEIIRSRKA 298
KLR + +L R+ + + E E+ + LKEA A N++ AKE+I+S A
Sbjct: 863 KLRSQVESLTRKAQLQEVELERTTKQLKEALAITNEETTRCKAAKEVIKSLTA 915
>At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 967
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 155 EGY--NLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSKAH 328
+GY NL++ +RA+QRE E ++ + E K +A+E R ++ + +
Sbjct: 25 KGYIRNLEKNLRALQREMEDLRATQHEVQNK--------VAREESRHQQRLEAVQVWLDR 76
Query: 329 LNSVQLQMKNQL 364
+NS+ ++ K+ L
Sbjct: 77 VNSIDIECKDLL 88
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +2
Query: 101 PERNPKEMVNEW---SHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILA 271
P ++ + +W ++ RKE +R+ + +++E +K++LKEA ND+ C +L
Sbjct: 471 PSLGNRDTIKKWRDVANDARKEVLEKERENQRLKQEVTGLKQALKEA---NDQ--CVLLY 525
Query: 272 KEIIRS 289
E+ R+
Sbjct: 526 NEVQRA 531
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +2
Query: 92 GKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILA 271
G+ +R +EM+N +R+E D + ++E IK+SL + ++ ++ ++A
Sbjct: 83 GEKRKRLAEEMLNRRREAMRREREEADNDDDDDEDDDETIKKSLMQKQQEDSGRIRRLIA 142
Query: 272 KEI 280
+
Sbjct: 143 SRV 145
>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
sigma-like factor (SIG5) identical to RNA polymerase
sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
sigma-like factor [Arabidopsis thaliana] GI:4033838;
contains Pfam profiles PF04545: Sigma-70, region 4,
PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
Length = 517
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 164 NLDRQVRAIQREEEKIKRSLKEAATKND 247
++D++V Q+EEEKI+R +++ + ND
Sbjct: 178 SVDKKVTKRQQEEEKIERLVRDYSASND 205
>At2g37970.1 68415.m04660 SOUL heme-binding family protein weak
similarity to SOUL protein [Mus musculus] GI:4886906;
contains Pfam profile PF04832: SOUL heme-binding protein
Length = 225
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 80 MGLFGKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRS----LKEAATKND 247
+G+FGK PE E + + + KEG + I +E EKI+ + KE +
Sbjct: 69 IGVFGK-PENEKPEKIAMTAPVITKEGEKIAMTAPVITKESEKIEMTSPVVTKEGGGEGR 127
Query: 248 KQVCTI 265
K++ T+
Sbjct: 128 KKLVTM 133
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/53 (20%), Positives = 29/53 (54%)
Frame = +2
Query: 95 KSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQ 253
+SP R ++ E ++ R + DR+ R +++ + +R+ +A+ ++K+
Sbjct: 143 RSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKR 195
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/53 (20%), Positives = 29/53 (54%)
Frame = +2
Query: 95 KSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQ 253
+SP R ++ E ++ R + DR+ R +++ + +R+ +A+ ++K+
Sbjct: 143 RSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKR 195
>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
Pfam profile PF03126: Plus-3 domain
Length = 643
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +2
Query: 188 IQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSKAHLNSVQLQMKNQLG 367
+ E++++++ L+ A +KND+ + +I + + NK K L ++ KN+
Sbjct: 421 VAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALKLAEMNKKNRAE 480
Query: 368 *FDN 379
F N
Sbjct: 481 NFKN 484
>At1g20590.1 68414.m02571 cyclin, putative similar to SP|Q40671
G2/mitotic-specific cyclin 2 (B-like cyclin) (CYCOS2)
{Oryza sativa}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 199
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 242 NDKQVCTILAKEIIRSRKA-INKIYTSKAHLNSVQLQMKNQLG 367
N++Q+ K + KA K+ S HL+S LQ NQLG
Sbjct: 143 NEEQLLACARKMVAFHHKAGTGKLTGSTTHLSSFMLQEVNQLG 185
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,512,625
Number of Sequences: 28952
Number of extensions: 231610
Number of successful extensions: 716
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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