Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0438
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    29   0.29 
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   2.0  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   3.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   4.7  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   4.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   4.7  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   8.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.2  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 113 PNTRKITKFVNF*LIFSVVKFDYFFCIRS*NVYLHFF 223
           P+ R   +++ + +  S++K DY+FC+ +   Y  FF
Sbjct: 194 PDLRMRRRYLVYKIFMSLIKSDYYFCLTATVQYAIFF 230


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 171 NLIISFVFVVKMFTSIFLCKVW 236
           +++I+FVF+  +F   F+C +W
Sbjct: 276 SVVIAFVFLSLIFFISFICPIW 297


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 257 NNFRNASPNFT*KNGGKHFNYEYKRNN 177
           NN  N  P FT +   K+F+   +RNN
Sbjct: 483 NNSLNDKPGFTIEQKDKNFSINNERNN 509


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 103 NKKHGIIDFVFNYTIYVTEYNI 38
           +KKH I + + +Y I +T YN+
Sbjct: 478 SKKHKIAEQLMSYDIVLTTYNV 499


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 81  SIIPCFLFKHYLIQEKLRN 137
           SI  C    HYL+Q KLR+
Sbjct: 703 SIAACGAVHHYLVQNKLRS 721


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 253 ILETRRQTLHKKMEVNILTTNTKEIIKFYYTKNQLKIYKFRN 128
           + +T+R+T HK   V  +   T E+   + + N  ++Y+ R+
Sbjct: 172 VSKTKRRTKHKLAPVVEVPEITNEVSPKFTSTNDEQVYRLRS 213


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 320 CHGITKFIHSFFE 358
           C GITKFI+S F+
Sbjct: 103 CLGITKFIYSIFK 115


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 35  KNIIFRHIYCVIKNKINYSMFFI 103
           KN+     YC+ KNK++Y++ +I
Sbjct: 521 KNLPRFFCYCLKKNKLSYALKYI 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,659
Number of Sequences: 5004
Number of extensions: 28652
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)