Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0438
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.28 
SB_43938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  28   2.6  
SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)               28   2.6  
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 27   6.1  
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               26   8.0  
SB_58927| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)                      26   8.0  
SB_36181| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 2   DPPGCRNSARGKNII 46
           DPPGCRNS  GKN +
Sbjct: 93  DPPGCRNSIAGKNTV 107


>SB_43938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 2   DPPGCRNSARGKNIIFRHIYCVIKNKINYSMFFI*TLPNTRKITKFV 142
           DPPGCRNS    N    HIY V  N IN+      T+ +  ++T  +
Sbjct: 17  DPPGCRNSINTIN----HIYHV-TNTINHIYHVTNTINHIYQVTNHI 58


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 337 FCYTVTLI*KCWHSYRIKS*HETKSFTIILETRRQTLHKK 218
           FCY +       H YR+K+ H++K++       R   +KK
Sbjct: 186 FCYIMCCYTLRQHRYRLKAIHKSKAYVFSSNNTRSNSNKK 225


>SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 2  DPPGCRNSARGKNIIFRHIYCVIK 73
          DPPGCRNS R    I   I+ +IK
Sbjct: 17 DPPGCRNSIRSTTTI--TIFTIIK 38


>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
          Length = 863

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
 Frame = -1

Query: 250 LETRRQTLHKKMEVNILTTNTKE-IIKFYYTKNQLKIYKFRNFSCIR*CLNKKHGIIDFV 74
           +ET   T          TT TK+     Y  +N   I     F C+  CL    G    +
Sbjct: 71  IETTTTTTKTTTTTTTTTTTTKQGRSSAYQRQNLFTIILISFFFCVGHCLRAPRGTYSVI 130

Query: 73  FNYTIYV 53
            NY I +
Sbjct: 131 ANYIIII 137


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 2   DPPGCRNSARGKN-IIFRHIYCVIKNKINYSMFFI 103
           DPPGCRNS   +N I+ R ++   +  + ++ + +
Sbjct: 93  DPPGCRNSMIYENYILLRKLHSTAQTTLYFANYIL 127


>SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 2  DPPGCRNSARGKN 40
          DPPGCRNS  G N
Sbjct: 17 DPPGCRNSIEGCN 29


>SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 2  DPPGCRNSARGKNI 43
          DPPGCRNS + +++
Sbjct: 17 DPPGCRNSIQARSV 30


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 2  DPPGCRNSARGKNI 43
          DPPGCRNS  G  +
Sbjct: 34 DPPGCRNSIDGNGV 47


>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 216 WR*TF*LRIQKK*SNFTTLKIN*KFTN 136
           W+    LRI+K+ +NFTTLK    FT+
Sbjct: 71  WKTQTTLRIEKELANFTTLKREFSFTD 97


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 326 RDINLKMLAFLSD*IIARNKVVYN-NF--RNASPNFT*KNGGKHFNYEY 189
           R  N+K +  L+D +IAR + V+N NF  R+  P+      G+H N  Y
Sbjct: 103 RKFNMKTVLMLADQMIARIEYVHNKNFIHRDIKPDNFLMGIGRHCNKLY 151


>SB_58927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 35 YLVPNSCSPGD 3
          YL+ NSCSPGD
Sbjct: 7  YLISNSCSPGD 17


>SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)
          Length = 179

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 2  DPPGCRNSARGK 37
          DPPGCRNS + K
Sbjct: 17 DPPGCRNSIKDK 28


>SB_36181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 38 FYLVPNSCSPGD 3
          FY + NSCSPGD
Sbjct: 2  FYSISNSCSPGD 13


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,762
Number of Sequences: 59808
Number of extensions: 183819
Number of successful extensions: 1712
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)