Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0438
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    28   2.3  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    27   3.0  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    27   3.0  

>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
           family protein 2 protein.
          Length = 1551

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 32  GKNIIFRHIYCVIKNKINYSM 94
           GK +IF+H Y ++  +INY++
Sbjct: 549 GKRLIFQHFYALLVCRINYTL 569


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 65  VIKNKINYSMFFI*TLPNTRKITKFVNF*LIFSVVKFDYFFC 190
           ++K+ IN S      LP+ +K T   NF L F +++  YF C
Sbjct: 157 LVKDWINNSFREFSELPDDQKTTLLHNFYLQFIILEGGYFAC 198


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 65  VIKNKINYSMFFI*TLPNTRKITKFVNF*LIFSVVKFDYFFC 190
           ++K+ IN S      LP+ +K T   NF L F +++  YF C
Sbjct: 149 LVKDWINNSFREFSELPDDQKTTLLHNFYLQFIILEGGYFAC 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,259,604
Number of Sequences: 27780
Number of extensions: 158630
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)