Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0437
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8052| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.089
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)                     28   5.9  
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)             28   7.7  

>SB_8052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%)
 Frame = +3

Query: 438 GTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTV 617
           G +  +  YPIKSC  + L+ A C    L +G   DR  +++++KN  +T R +P L  V
Sbjct: 245 GHVSGLYIYPIKSCKGIPLDSALC----LTEGLQYDRRWVIVNDKNVVLTQRQYPSLALV 300

Query: 618 QPTI 629
            P +
Sbjct: 301 SPRL 304


>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +3

Query: 444 LKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQP 623
           L+ I  YP+KSCA   +        GLK     DR  MVI E    V+ +  P+L  ++P
Sbjct: 534 LEQICLYPVKSCAAYKVSNWRIGPRGLK----YDRQWMVITESGACVSQKREPKLCLIKP 589

Query: 624 TI 629
           +I
Sbjct: 590 SI 591


>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
          Length = 956

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +3

Query: 495 EKAE-CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKH 656
           ++AE C    LKD  +RDR+V+   DE  +   +  R  P+L  V  ++R++ ++  H
Sbjct: 59  QQAEPCEFGALKDSLIRDRIVIGTSDESGRERLLRERPVPDLARVVESLRAAEISRAH 116


>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
          Length = 689

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 341 DGSWCAWRCLLRLSPVLSRKQ 403
           +G  C WRCL+ L   L++KQ
Sbjct: 581 EGGNCTWRCLMFLQKKLAKKQ 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,147
Number of Sequences: 59808
Number of extensions: 298506
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)