Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0435
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.3  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   5.7  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    25   10.0 
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   10.0 

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 413 KRVLSVTPARVVGVDVDGLGERPFDD 336
           +R+L  T  +++ +DVDGL   P D+
Sbjct: 529 QRLLQDTLVKIIDLDVDGLFNMPLDN 554


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 76  ITCLHSTATWRAKETTRRPPSTVNCP 153
           I C++S+   RAK T        NCP
Sbjct: 101 IVCVYSSPQKRAKRTAEEITKVANCP 126


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 58  TRTQPIITCLHSTATWRAKETTRRPPSTVNCPRG 159
           TR +    C++S  ++  +ETT   P T+   RG
Sbjct: 95  TRPKQFDECIYSPYSYNNEETTDLLPDTLESSRG 128


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 404 LSVTP-ARVVGVDVDGLGERPFD 339
           L V+P A  +GVD D +GE  FD
Sbjct: 436 LRVSPDAEEIGVDADQIGEYAFD 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,245
Number of Sequences: 5004
Number of extensions: 25325
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)