Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0435
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    30   1.4  
01_05_0164 + 18827390-18827710                                         29   2.5  
07_03_0533 - 19178296-19178516,19178790-19178847,19179315-191793...    29   3.3  
12_01_0339 + 2603351-2603891,2604048-2604226                           27   7.7  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    27   7.7  
02_05_1013 - 33502989-33503174                                         27   7.7  

>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 91  STATWRAKETTRRPPSTVNCPRGYCRTACPPSRRSNPQSPM 213
           S+ T  +     RPPS +  PRG      PP RR  P  PM
Sbjct: 355 SSPTLGSSPVHLRPPS-IPQPRGRAPNPSPPKRRPQPPEPM 394


>01_05_0164 + 18827390-18827710
          Length = 106

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 91  STATWR---AKETTRRPPSTVNCPRGYCRTA 174
           S  TWR   A  T+RRPP+T   P G  R+A
Sbjct: 45  SRTTWRPDLAPTTSRRPPATTTDPHGRRRSA 75


>07_03_0533 -
           19178296-19178516,19178790-19178847,19179315-19179370,
           19179527-19179646,19180446-19180599,19180911-19181018,
           19181134-19181197,19181342-19181518,19181679-19181824,
           19181912-19181941,19181999-19182150,19182266-19182347
          Length = 455

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 537 TRPAPVQG--ETWTSPDRSRTVRATSVPPRRYEP 442
           T+PA V    ETW +PD  R V A S+  R  +P
Sbjct: 33  TKPAGVAKVVETWGAPDAPRAVLAASLADRAVDP 66


>12_01_0339 + 2603351-2603891,2604048-2604226
          Length = 239

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 70  PIITCLHSTATWRAKETTRRPPSTVNCPRGYCRTAC 177
           P I+ +   A W  ++  +  P  V+C  G+ R+AC
Sbjct: 152 PTISQIEFAACWACEKRAKGKPVYVHCAFGHGRSAC 187


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 RRPPST-VNCPRGYCRTACPPSRRSNPQSPMR 216
           R PPS  V  PR  CR   PP RR    SP+R
Sbjct: 270 RSPPSRRVESPR--CRPDSPPIRRRTAPSPIR 299


>02_05_1013 - 33502989-33503174
          Length = 61

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 453 FEEERWSRGRCVTCLDWSTFHPE 521
           F+E     G  V CLD S FHPE
Sbjct: 11  FKEVMTPNGTTVACLDESGFHPE 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,864,975
Number of Sequences: 37544
Number of extensions: 230859
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)