Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0435
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   8e-20
SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)                   31   0.84 
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_10376| Best HMM Match : Pico_P2A (HMM E-Value=7.7)                  30   1.5  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  

>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 47/101 (46%), Positives = 64/101 (63%)
 Frame = +3

Query: 255 VRELSADEKQTIMLSAEFQRFMSRAGRVIERALAESVDIXXXXXXXXXXENALDDKSAAR 434
           V ELS ++K  I+ S EF RF  +A R++ERAL E +DI          +     ++A  
Sbjct: 169 VIELSEEQKDQILGSQEFSRFFDKAVRLVERALTEDLDITIDYSGAEGDDLEGGSQAARE 228

Query: 435 LSLVRTFEEERWSRGRCVTCLDWSTFHPELVLASYYNSDDA 557
           L+L R F +ERWSR R VTCLDWS  +PEL++ASY N++DA
Sbjct: 229 LTLSRDFYDERWSRHRTVTCLDWSNQYPELLVASYNNNEDA 269


>SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)
          Length = 289

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 504 TSPDRSRTVRATSVPPRRYEPGKDGPLTCR 415
           T+P R+R ++ T  PP     GK  P+ CR
Sbjct: 197 TAPARARPIQTTCKPPAHLSTGKGIPILCR 226


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 55  VTRTQPIITCLHSTATWRAKETTRRPPSTVNCPRGYCRTACPPSRRSNPQSPMRQS 222
           +T   P   C HST    +  +T   PST + P     T   PS  S P +P   S
Sbjct: 417 ITPRTPSTPCTHSTPGTPSTPSTPSTPSTPSTP-SLTHTPSTPSTPSTPSTPSTPS 471


>SB_10376| Best HMM Match : Pico_P2A (HMM E-Value=7.7)
          Length = 182

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 552 RHYCSTRPAPVQGETWTSP-DRSRTVRATSVPPRRYEPGKDGPLT 421
           RHY S R  PV   TW SP D   T RA    P  Y P + GP T
Sbjct: 106 RHYLSKRQPPVGDWTWLSPLDLHSTPRAYREAP-LYLP-RAGPAT 148


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 52   CVTRTQPIITCLHSTATWRAK-ETTRRPPSTVNCPRGYCRTACPPSRRSNPQSPMR 216
            C+T  QP+    ++TA   ++   T +P   V C  G C   C PS    P  P +
Sbjct: 1420 CITVLQPLNEKHNTTAECPSECSETCKPECPVKCCTGECPAGCLPS-NCKPDCPSK 1474


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,842,135
Number of Sequences: 59808
Number of extensions: 234577
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)