Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0435
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    49   3e-06
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 32/95 (33%), Positives = 49/95 (51%)
 Frame = +3

Query: 255 VRELSADEKQTIMLSAEFQRFMSRAGRVIERALAESVDIXXXXXXXXXXENALDDKSAAR 434
           V  LS +EK  + L  EF    +R+ +VI RAL E +DI          E A+   S   
Sbjct: 212 VPPLSDEEKYRLTLDPEFLDSFNRSCKVISRALNEEIDI-CINYTKDPYEKAI--ASDDL 268

Query: 435 LSLVRTFEEERWSRGRCVTCLDWSTFHPELVLASY 539
           L L + +++E W+  R VT + +S  +P+L+  SY
Sbjct: 269 LHLAQVYQDETWTAKRLVTGMAFSEHYPDLLAVSY 303


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 447 RTFEEERWSRGRCVTCLDWSTFHPELVLASYYNSD 551
           R + E+R+     VTC+ W      + LASY + +
Sbjct: 216 RLYNEDRYIEKTSVTCIRWLPGDSNIFLASYVSGN 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,722,963
Number of Sequences: 27780
Number of extensions: 163811
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)