Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0435
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   4.9  
At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase fam...    27   6.4  
At2g47390.1 68415.m05915 expressed protein                             27   6.4  
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ...    27   8.5  
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP...    27   8.5  

>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 534 RPAPVQGETWTSPDRSRTVRATSVPPRRYEPGKDGP 427
           +PAPV+  +  +  R    R   +P R+Y PG++GP
Sbjct: 708 KPAPVRISSLLT-SRHLLHRRVRLPARKYRPGENGP 742


>At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 7 AMPBP7 (AMPBP7)  GI:20799722
          Length = 569

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 469 GRADGA*PVWTGPRFTLN-WCWP 534
           G  DGA  +WT P F  N WC+P
Sbjct: 234 GMQDGAVYLWTLPMFHCNGWCFP 256


>At2g47390.1 68415.m05915 expressed protein
          Length = 961

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 474 ATSVPPRRYEPGKDGPLTC 418
           AT   P  Y+P KDGPL C
Sbjct: 668 ATLYLPPGYDPSKDGPLPC 686


>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1354

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 496  WTGPRFTLNWCWPRTTIVTTH 558
            W G + T  W W RT  +  H
Sbjct: 1294 WKGCKMTFKWAWSRTEHIRVH 1314


>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
           TCP-1-alpha / chaperonin (CCT1) identical to
           SWISS-PROT:P28769- T-complex protein 1, alpha subunit
           (TCP-1-alpha) [Arabidopsis thaliana]
          Length = 545

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 536 RGQHQFRVKRGPVQTGHAPSARPAFLLEGTNQGKTGR*LVVKRVLSVTPARVVGVD 369
           RG+ ++ +K   +   H  SAR ++LL G     TGR       L V+PA++  +D
Sbjct: 188 RGEIKYPIKGINILKAHGQSARDSYLLNGYAL-NTGR-AAQGMPLRVSPAKIACLD 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,349,711
Number of Sequences: 28952
Number of extensions: 156390
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)