Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0433
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   1.3  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   1.7  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    24   9.1  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 66  TSYLSGRIQTVDVKGNRSSGTVLKMGVPQGFHSGSFFISNI 188
           TS++SG +Q V +   R  G+V+       FH     ++N+
Sbjct: 384 TSFISGILQLVLLNNIREDGSVISALAQNSFHKVESALANV 424


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
 Frame = +3

Query: 171 FFISNIYKL-L*NMFL---YKFMLEND*YSDKYYE 263
           +F+++IY++ L  ++L   + ++LEND   D YYE
Sbjct: 306 YFVTDIYQIHLLGVYLNLKHVYLLENDDVEDAYYE 340


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 181 LIYINCCKICFCINLC*KTIDIVTNIMSFNLLSC 282
           ++YI C  +CFC   C   I   T+   FN L C
Sbjct: 1   MVYIKCRYVCFC---C-AFISNTTSKSIFNELRC 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,997
Number of Sequences: 5004
Number of extensions: 34600
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)