Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0433
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    26   8.6  
11_06_0110 + 20212221-20214011,20214072-20214368                       26   8.6  
02_05_1175 - 34706870-34707616                                         26   8.6  
01_06_1213 - 35466954-35467592                                         26   8.6  

>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +3

Query: 81  GRIQTVDVKGNRSSGTV--LKMGVP 149
           G ++ +D++GNR +GT+  L +GVP
Sbjct: 167 GELRALDLRGNRLNGTLDTLLLGVP 191


>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 241 QSFSNINLYKNIFYNSLYILEIKKDPEWNP 152
           + F+N+   K+I+    Y LEI  DPEW P
Sbjct: 426 EHFANLTSLKSIYLCYNY-LEIVVDPEWLP 454


>02_05_1175 - 34706870-34707616
          Length = 248

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 159 GTPEVHPFSTRCLKIY 112
           GTPE++PF  R +++Y
Sbjct: 172 GTPEMNPFGARAVRLY 187


>01_06_1213 - 35466954-35467592
          Length = 212

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 159 GTPEVHPFSTRCLKIY 112
           GTPE +PF+ R ++IY
Sbjct: 123 GTPESNPFAARAVRIY 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,471,902
Number of Sequences: 37544
Number of extensions: 178366
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)