Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0433
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31140.1 68415.m03802 expressed protein                             27   4.1  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   5.5  
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa...    26   7.2  

>At2g31140.1 68415.m03802 expressed protein
          Length = 205

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 214 KNIFYNSLYILEIKKDPEWNP*GTPIFNTVPEDLLPFTST 95
           KN+FY  +  L   K PE +P  T   NT+    +P  +T
Sbjct: 42  KNLFYGKITYLHSDKGPEMSPTMTANENTLLIRKIPIANT 81


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 253 LSLYQSFSNINLYKNIFYNSL--YILEIKKDPE 161
           L   ++  NI LYK I YNSL  Y   I+ +P+
Sbjct: 145 LDYIKTSCNITLYKTICYNSLSPYASTIRSNPQ 177


>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 3
           WD-40 repeats (PF00400);similar to Type II
           inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
           (5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
          Length = 1305

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = +3

Query: 72  YLSGRIQTVDVKGNRSSG------TVLKMGVPQGF 158
           Y+SG IQ +D++GN  +G       V+KM    G+
Sbjct: 500 YVSGHIQIIDLEGNLIAGWVAHNNAVIKMAAADGY 534


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,132,719
Number of Sequences: 28952
Number of extensions: 161953
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)