Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0431
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.3  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   9.6  

>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 476 RGEDFIKGTSTVLIKCIFEILNSTSFVYANLKLTIGRYTFAYSF 345
           R   F K  + ++   I +   S SF+  +LKL+IG   F + F
Sbjct: 220 RESHFFKTMNEIINTKIQKDQFSESFIVDSLKLSIGHLIFTFPF 263


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 467 DFIKGTSTVLIKCIFEILNSTSFVYANLKLTIGR 366
           D  +G S  + KC F+I +S+   +    +TI +
Sbjct: 320 DIAEGRSNPITKCAFDIKDSSMQSFTKTTITISK 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,934
Number of Sequences: 5004
Number of extensions: 46114
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)