Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0431
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    81   4e-16
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    71   7e-13
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    51   6e-07
Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical pr...    29   2.2  

>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
            protein B0222.9 protein.
          Length = 1217

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 46/149 (30%), Positives = 75/149 (50%)
 Frame = +3

Query: 9    DSGSDISTVIEGSMKIHAQYHYTMGERKHLWQLLLQDGLEIYSSTQWLDLTNIAIAKCLD 188
            +S  + S V+EG   I  Q HY +  +  L      D L +  STQ    T + +A+ + 
Sbjct: 632  ESLENSSKVLEGECDIGGQEHYYLETQSSLVIPGEGDELIVNCSTQGTSFTQLMVAETMK 691

Query: 189  MPVNSINIIVRRLGGGYGSKITRASQIACAAACVTRFLGRTCRFILPLQTNMKAIGKRIP 368
            +P + I +  +RLGGG+G K+  AS IAC  A V + L R     L    ++   GKR  
Sbjct: 692  IPAHKIIVKTKRLGGGFGGKVNNASWIACMCAIVAKKLNRPTYGFLSRADDLAITGKRHE 751

Query: 369  TNCEFEIGVNKAGRIQNLKNTFYQDGGCS 455
             + ++ +G+N  G+I+ +    + +GG S
Sbjct: 752  VHAKYRVGINFDGKIEGIHYQAWLNGGWS 780


>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical protein
            F55B11.1 protein.
          Length = 1358

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 40/144 (27%), Positives = 73/144 (50%)
 Frame = +3

Query: 18   SDISTVIEGSMKIHAQYHYTMGERKHLWQLLLQDGLEIYSSTQWLDLTNIAIAKCLDMPV 197
            S    ++EGS+ +  Q H+ +  ++ +      D LEI  S Q ++   I +AKCL M  
Sbjct: 752  SKYDRIVEGSIDMGGQEHFYLETQQCIVIPHEDDELEIIISNQCVNDVQIEVAKCLGMAQ 811

Query: 198  NSINIIVRRLGGGYGSKITRASQIACAAACVTRFLGRTCRFILPLQTNMKAIGKRIPTNC 377
            + I+  V+R+GGG+G K +  + +A  A+   +  GR  +F      +M   G R P   
Sbjct: 812  HKISTKVKRIGGGFGGKESTGAILAVPASLAAKKFGRPMKFKFERFDDMAITGTRHPFTL 871

Query: 378  EFEIGVNKAGRIQNLKNTFYQDGG 449
            ++++ V++ G+  +L  T   + G
Sbjct: 872  QYKLAVDENGKFLDLDYTALSNSG 895


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 26/92 (28%), Positives = 48/92 (52%)
 Frame = +3

Query: 33  VIEGSMKIHAQYHYTMGERKHLWQLLLQDGLEIYSSTQWLDLTNIAIAKCLDMPVNSINI 212
           V+EG   + +Q H+ +  +  L   +      ++ STQ    T + +A+ + +P + I +
Sbjct: 678 VLEGESSLGSQEHFYLETQSSLNYRI------VHCSTQGTSFTQLMVAETMKIPAHKIIV 731

Query: 213 IVRRLGGGYGSKITRASQIACAAACVTRFLGR 308
             +R+GG +G K+  AS IAC  + V + L R
Sbjct: 732 KTKRMGGAFGGKLNNASWIACICSVVAKKLNR 763


>Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical
           protein T19B10.9 protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 417 NLKNTFYQDGGCSFNEVLTPLTVKHFQNCYDSKRWF 524
           N+   F +D GC F  + +PL+V +F N  D  R F
Sbjct: 171 NMLCDFEKDSGCRFKSISSPLSVGNFPNA-DHYRTF 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,106
Number of Sequences: 27780
Number of extensions: 253587
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)