Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0431
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 351 IGKRIPTNCEFEIGVNKAGRIQNLKNTFYQDGGCSFNEVLTP 476
           +G ++P  C F   VN A R++            S  E+L+P
Sbjct: 531 VGLKMPRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSP 572


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 303 GRTCRFILPLQTNMK---AIGKRIPTNCEFEIGVNKAGRIQNL 422
           G+  R  + + T M     +GK++P  C F   V  A + ++L
Sbjct: 578 GKPIRMRIGIHTGMVLAGVVGKKMPRYCLFGHNVTLANKFESL 620


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -1

Query: 473 GEDFIKGTSTVLIKCIFEILNSTSFVYANLKLTIGRYTFAY 351
           G  F+ GT+T+ +     +  +++ + A+++  +G + F Y
Sbjct: 166 GGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLY 206


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -1

Query: 473 GEDFIKGTSTVLIKCIFEILNSTSFVYANLKLTIGRYTFAY 351
           G  F+ GT+T+ +     +  +++ + A+++  +G + F Y
Sbjct: 166 GGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLY 206


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 300 LGRTCRFILPLQTNMKAIGKRIPTNCEFEIGVNKAGRI 413
           LG+  R    + ++MK++G+ +    +FE    KA R+
Sbjct: 189 LGKFHRVCTQIGSSMKSVGEVMAIGRKFEEAFQKALRM 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,960
Number of Sequences: 438
Number of extensions: 3328
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)