Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0430
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53877| Best HMM Match : Glyoxalase (HMM E-Value=0.58)               55   3e-08
SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_30158| Best HMM Match : Pertactin (HMM E-Value=3.1)                 28   5.9  
SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_53877| Best HMM Match : Glyoxalase (HMM E-Value=0.58)
          Length = 220

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = +2

Query: 182 MVSGRALHFVFKVADRTLTAKFYREILGMKVL 277
           M S RALHFVFKVA+RT TAKFYREILGMK L
Sbjct: 1   MASKRALHFVFKVANRTETAKFYREILGMKGL 32



 Score = 34.7 bits (76), Expect = 0.052
 Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +2

Query: 443 GITVQSSESLKRAQTNNWPIKEH-NGLKYVEAPGGYKFY 556
           G+T+ S + + RA+ +N+ +++  NG   V +PGGYKF+
Sbjct: 31  GLTLHSKDVVSRAKEHNYSMEQGTNGHYTVHSPGGYKFH 69


>SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 275 LRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVVELTYNYGVTHYEQGNDFLG 445
           LRH  + +      N      W KT       D   +++ TY++ V H+ +  DFLG
Sbjct: 518 LRHISYDQARRRIMNWDVRMEWDKTF------DDVIILDRTYHFNVIHWYKACDFLG 568


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 368  EDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVEAP 538
            ED    VE  Y    + +E G D L   VQ S S++  +  + P  EH+      +P
Sbjct: 2278 EDEEAFVERKYTPRKSSFEDGQDKLRDNVQYSSSVRIPKRESSPTPEHSSRYLTPSP 2334


>SB_30158| Best HMM Match : Pertactin (HMM E-Value=3.1)
          Length = 426

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 280 AENLHSEDFPIKFCC*SPICDFKY 209
           AEN H+E   +K CC S  CDF Y
Sbjct: 32  AENGHAE--VVKMCCESGACDFVY 53


>SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 392 VQQQNVYLQGHIQP--WFCSIGLHKVHCKLPRILH*TLHGGEPSFRGF 255
           +Q  NV  +G I     FC + +HKVH  +    H T++G   + R F
Sbjct: 8   MQVMNVQAKGGIALVYLFCRLPVHKVHLGVDHRKHVTVYGTRAACRAF 55


>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -2

Query: 445 AKEIISLFVMRYTIVVGQF----NNKMCIFRAISNHGFAPSVCIRSIASCL 305
           A +I SL VM YT+VVG++    +    +F  I    FA    + S A CL
Sbjct: 652 AADIWSLGVMLYTMVVGRYPFHDSEPTALFTKIRRGHFAIPDTVSSKAKCL 702


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,318
Number of Sequences: 59808
Number of extensions: 332726
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)