Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0428
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    93   4e-20
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   2.6  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   4.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.1  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 47/88 (53%), Positives = 58/88 (65%)
 Frame = +3

Query: 72  LQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 251
           +    E+AAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59

Query: 252 KLAGTSKEDAQKAYIEIVEGLIASIGLK 335
           +L G SKEDA   YI  V+ L    G+K
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 21  RHEDRRLTSYPHLINMSLQEKLERAAANVKNLKALPTDA 137
           RH+   + S  +L   S+++KL  A+A+ + ++ALP  A
Sbjct: 59  RHDGPFIPSSENLEQYSVKKKLNAASASFQPVRALPVKA 97


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +3

Query: 18  IRHEDRRLTSYPHLINMSLQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPA 197
           ++++++R+ +    +++SL++KLE      K  K    +   L      K+  V   + A
Sbjct: 353 MQNDEKRINNAKTELSLSLEKKLEAKKQKEKVYKDKLDELANLETMVLEKKKAVATREAA 412

Query: 198 NRPGLLDL 221
           N+  L+DL
Sbjct: 413 NKIRLVDL 420


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 465 HFCLKCFFFKNTNSY 509
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 132  DAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHKL-AGTSKEDAQKAYIE 299
            DA LLN+Y +F+Q  + V +A    +  L + +K +    +W        KE A+K++ E
Sbjct: 3316 DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKDTNVYALKESAKKSHAE 3375

Query: 300  IVEGL 314
            + + L
Sbjct: 3376 LFKVL 3380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,108
Number of Sequences: 5004
Number of extensions: 43808
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)