Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0428
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    66   1e-11
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    66   2e-11
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    63   1e-10
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    53   1e-07
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477     31   0.50 
11_01_0768 - 6442332-6443792                                           28   6.2  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 36/84 (42%), Positives = 49/84 (58%)
 Frame = +3

Query: 66  MSLQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 245
           M LQE  E+ A   K L    ++   L LY  +KQATVGD + A RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59

Query: 246 WHKLAGTSKEDAQKAYIEIVEGLI 317
           W  + G SKE+A   YI  V+ L+
Sbjct: 60  WKAVEGKSKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 36/83 (43%), Positives = 48/83 (57%)
 Frame = +3

Query: 66  MSLQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 245
           M LQE  E  A  VK L    ++   L LY  +KQATVGD +  +RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59

Query: 246 WHKLAGTSKEDAQKAYIEIVEGL 314
           W  + G SKE+A   YI  V+ L
Sbjct: 60  WKAVEGKSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 35/84 (41%), Positives = 47/84 (55%)
 Frame = +3

Query: 66  MSLQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 245
           M LQE+ E  A   K L    ++   L LY  +KQATVG      RPG+ +LK + K+DA
Sbjct: 1   MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDA 59

Query: 246 WHKLAGTSKEDAQKAYIEIVEGLI 317
           W  + G SKE+A   YI  V+ L+
Sbjct: 60  WKAVEGKSKEEAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = +3

Query: 96  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 275
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     E
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159

Query: 276 DAQKAYIEIVEGL 314
           +A + YI +V+ L
Sbjct: 160 EAMQKYITVVDEL 172


>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
          Length = 486

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = +3

Query: 9   AAGIRHEDRRLTSYPHLINMSLQEKLERAAANVKNLKALPTDAQLLN 149
           A+G+R E + +    HL+N+ L+  +  AAAN++  +AL  DA+L N
Sbjct: 116 ASGVRFEWKDIALMTHLVNVPLEHWITSAAANIQ--RAL-VDAKLSN 159


>11_01_0768 - 6442332-6443792
          Length = 486

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 69  SLQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGL 212
           ++ + L+ + A V  +K +P D  LL ++A F Q   G A   +RP L
Sbjct: 140 AVTDALKPSGAGVNTVK-VPEDEWLLAIHASFSQLLRGPAGGVSRPPL 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,933,465
Number of Sequences: 37544
Number of extensions: 283872
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)