Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0428
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   5e-08
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)                  29   2.7  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    28   4.8  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 30/76 (39%), Positives = 44/76 (57%)
 Frame = +3

Query: 72  LQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 251
           +Q+   +A   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 252 KLAGTSKEDAQKAYIE 299
           +     +E A K Y++
Sbjct: 71  QHGKMPQEKAMKIYVQ 86


>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
          Length = 506

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +3

Query: 15  GIRHEDRRLTSYPHLINMSLQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADP 194
           G+   DR     P+    S QE  ER   N + L+A+     +L+      + T+    P
Sbjct: 166 GVAATDRETIDDPNSSESSRQEARER---NEERLRAMFNTMVVLHAEFTGGELTLFFGQP 222

Query: 195 ANRPGLLDLKGKAKFDAWHKL 257
             RP  + L+  + F++W+ L
Sbjct: 223 IRRPRFVALRQCSLFNSWYNL 243


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 66   MSLQEKLERAAANVKNLKALPTDAQLLNLYAHFK-QATVGDAD 191
            + L + L+R   +  NL    TDA   NLY+  K + TVGD++
Sbjct: 1106 LHLSKTLDRETTSSYNLVVKATDASNANLYSTAKIEITVGDSN 1148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,798,596
Number of Sequences: 59808
Number of extensions: 309922
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)