Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0428
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    68   4e-12
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden...    46   2e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC...    43   1e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    35   0.045
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    35   0.045
At1g61370.1 68414.m06916 S-locus lectin protein kinase family pr...    27   9.0  

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 35/84 (41%), Positives = 49/84 (58%)
 Frame = +3

Query: 66  MSLQEKLERAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 245
           M L+E+ E  A  V  L  LP++  LL LY  +KQA  G  D  +RPG+  +K +AK+DA
Sbjct: 1   MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59

Query: 246 WHKLAGTSKEDAQKAYIEIVEGLI 317
           W  + G S E+A   YI  V+ L+
Sbjct: 60  WKAVEGKSSEEAMNDYITKVKQLL 83


>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
           identical to acyl-CoA binding protein 2 [Arabidopsis
           thaliana] gi|12039034|gb|AAG46057
          Length = 354

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 30/74 (40%), Positives = 41/74 (55%)
 Frame = +3

Query: 93  AAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSK 272
           AAA+  + K +P+D Q   LY  +K AT G    A +P  L +  +AK+ AW KL     
Sbjct: 118 AAADRLSQK-VPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGAMPP 174

Query: 273 EDAQKAYIEIVEGL 314
           E+A + YIEIV  L
Sbjct: 175 EEAMEKYIEIVTQL 188


>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
           putative similar to acyl-CoA binding protein 2
           [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 338

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 26/74 (35%), Positives = 37/74 (50%)
 Frame = +3

Query: 93  AAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSK 272
           AAA    L    ++   L LY  +K AT G    A +P  L +  +AK+ AW KL     
Sbjct: 106 AAAASDRLSQKVSNELQLQLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGAMPP 164

Query: 273 EDAQKAYIEIVEGL 314
           E+A + YI++V  L
Sbjct: 165 EEAMEKYIDLVTQL 178


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 84  LERAAANVKN-LKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLA 260
           L+ + ++ KN +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L 
Sbjct: 25  LDGSDSSAKNVISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLG 82

Query: 261 GTSKEDAQKAYIEIVE 308
                +A + +++I+E
Sbjct: 83  TMPSIEAMRLFVKILE 98


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 84  LERAAANVKN-LKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLA 260
           L+ + ++ KN +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L 
Sbjct: 25  LDGSDSSAKNVISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLG 82

Query: 261 GTSKEDAQKAYIEIVE 308
                +A + +++I+E
Sbjct: 83  TMPSIEAMRLFVKILE 98


>At1g61370.1 68414.m06916 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 814

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -2

Query: 283 WASSFEVPASLCQASNLALPFKSRRPGLLAGSASPTVACLK 161
           W +  E P S C   N   PF     GL   S  P   CLK
Sbjct: 275 WVTDLEAPVSSCDVYNTCGPF-----GLCIRSNPPKCECLK 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,953,251
Number of Sequences: 28952
Number of extensions: 226824
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)