Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0426
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   5.6  
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    25   9.7  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 125 TKTSFFSGIRF*TLYSQKWIYKKKHCLKLKLFSPPAL 15
           TK ++ +GIR   L +  W    KH  KLK  SP  L
Sbjct: 321 TKANYDNGIR---LENASWRTWMKHKFKLKTISPETL 354


>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 140 CVNFKITKPNYLNKDLIVVAY 202
           C    + KPN L  DL+VV+Y
Sbjct: 80  CAFVPVRKPNKLPGDLVVVSY 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,289
Number of Sequences: 5004
Number of extensions: 35190
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)