Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0425
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                30   1.2  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   27   8.7  

>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 344 SLIPPTQARRRLKSRDETEEKF 279
           +L PPT+ R+RLK R + EE F
Sbjct: 593 TLAPPTKTRKRLKKRSKVEELF 614


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 500 FKF*KNKCSPRMKIDKFVQNFGKNNKNY 583
           FK   +KC+P M  +KFV + G  +KNY
Sbjct: 26  FKNTPDKCAPIMLPEKFVSSKGFPSKNY 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,080,797
Number of Sequences: 59808
Number of extensions: 237601
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)