Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0425
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like nucl...    27   10.0 
AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical
           protein T21B4.9 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  PLRSSLFSVTWWCCLSTILFIMLFEASY 182
           P+R+SL ++ +WC LS I+    F   Y
Sbjct: 60  PVRNSLINLWFWCSLSQIMVSFFFTPFY 87


>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 123 VTWWCCLS-TILFIMLFEASYLNLFTAE*FFFFKLY*HL 236
           V+ +CC+S T+LF M    S+   F+ E   FFKLY HL
Sbjct: 304 VSNFCCISLTVLFKMYHNQSF-KCFSGEHPIFFKLY-HL 340


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 108 SSLFSVTWWCCLSTILFIMLFEASYLNLFTAE*FFFFKLY 227
           S+L++  +W  +    FI++F+  Y++LFT   F F   Y
Sbjct: 196 STLYTYIFWLTI----FIVVFKVIYISLFTTIFFIFLPQY 231


>AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 574 VIFAEVLNKLINFHARRAFVFLKFKV 497
           V++A+   KL +F  RRAFV + FK+
Sbjct: 95  VVYADFAGKLNDFAKRRAFVPITFKL 120


>AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical
           protein F27E11.1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 574 VIFAEVLNKLINFHARRAFVFLKFKV 497
           V++A+   KL +F  RRAFV + FK+
Sbjct: 95  VVYADFAGKLNDFAKRRAFVPITFKL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,046,671
Number of Sequences: 27780
Number of extensions: 203796
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)