Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0424
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    29   0.51 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   2.1  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    27   2.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   4.7  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.3  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.3  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   8.3  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 21  QYLKDLGYKTHLVGKWHLG 77
           + L++ GY T + GKWHLG
Sbjct: 109 EILQEAGYYTTMSGKWHLG 127


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 434 PLQISAWQSRRCT*RRLSASAGRGSVRKGCRCARPSG 324
           PL I+A    +CT   + +++ +G  R  C   RP G
Sbjct: 650 PLAIAAITGTKCTVPNIGSASLQGDARFACDVLRPMG 686


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 421 LPGRVVDVLEGVYQLLRGADRFVRVAA--VHGRVGQHQEQGLAF 296
           LPG  V V EG+  + +G D    V A     +V +H  + +AF
Sbjct: 168 LPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVARHSAEKIAF 211


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 275  KVVNSHNKSEPLFLMLAHSAVHSGNPYEPIRAPQKLIDAFKYIDDSARQKFAAVLSKL 448
            K++N  +  +   + L H  +   N    +   +KLI+A KYI+D+ R +      K+
Sbjct: 870  KLLNGSSDFKNNEIELLHDQIRITNA--KLEKREKLINASKYIEDTLRSEIQEAAEKV 925


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 405 SMYLKASISFCGARIGS*GLPLCTAEW 325
           S+Y   SI  C  +I +  L LCT  W
Sbjct: 166 SLYTHFSIYSCAEKISNTSLLLCTLPW 192


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 65  MASRGGYKKEYLPLNRGFDSHV 130
           MAS   +K++YL L + FDS V
Sbjct: 1   MASVKSFKRKYLKLRKSFDSVV 22


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 104 KANIPFCSLPEMPFPHQMRFIT*IL*ILPRAEF 6
           +AN+P+   P++P P  +  +T     LP+  F
Sbjct: 24  RANLPYPPAPQLPIPAVVDILTKASQALPQISF 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,826
Number of Sequences: 5004
Number of extensions: 48157
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)