Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0424
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468... 32 0.29
07_03_1477 + 26826661-26827019,26827218-26827338,26827813-268279... 29 2.1
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 29 2.1
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 29 2.7
02_05_0795 - 31792231-31794780 29 2.7
12_02_1243 + 27300978-27301682 28 4.7
06_01_0624 + 4542344-4543447 28 4.7
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 28 4.7
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 27 6.3
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996... 27 6.3
05_03_0035 - 7592177-7592938 27 8.3
02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818 27 8.3
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 27 8.3
01_01_0218 + 1856104-1856700,1856814-1857452 27 8.3
>07_01_0627 +
4685077-4685155,4685978-4686336,4686761-4686862,
4687528-4687598,4687871-4687989,4688327-4688422,
4688527-4688636,4688734-4688814,4689124-4689224,
4689663-4689771,4689971-4690076,4690140-4690225,
4690324-4690449,4690816-4690902
Length = 543
Score = 31.9 bits (69), Expect = 0.29
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +2
Query: 50 AFGGEMASRGGYKKEYLPLNRGFDSHVGFWTGRIDMYD-HTTMEQGSWGTDFRRGFEVAH 226
A G + +RG Y K+Y N F + +Y T +E R FEV
Sbjct: 18 AAGETLQARGMYPKQYGAANHAFSRFYSIQGQQRSLYGFRTNVETDDTQQSARMNFEVQK 77
Query: 227 DLFGVYATDVYTDEAIKVVNSHNKS 301
F A V + A V+NS + S
Sbjct: 78 RSFSSAAAHVQRNPAYSVLNSDDVS 102
>07_03_1477 +
26826661-26827019,26827218-26827338,26827813-26827962,
26828075-26828311
Length = 288
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 492 PRVCRALTTLPTDSSSFDRTAANFCL--AESSMYLKASISFCGARIGS*GLPL 340
PRV LT L F T FCL A S +L+ CGA++G G L
Sbjct: 87 PRVLHFLTRLSVQRVIFTETFIIFCLTVALSWTFLRELFLACGAQLGFEGFML 139
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 274 NSFVGVDICGVDTEQIVSYLETSPEVGSPRSLLHGRVVVHVDPSSPETDVTIEPSIQR 101
N VGV +CG D +I+ + + + G + + +H P+S E VT+ + ++
Sbjct: 481 NKVVGVHMCGEDAPEIIQGVAIAVKAGLTKQDFDATIGIH--PTSAEEFVTMRNATRK 536
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 131 GFWT-GRIDMYDHTTMEQGS-WGTDFRRGFEVAHDLFGVYATDVYTDE 268
G W G+ D Y T +GS + +R+G H ++ Y DVY E
Sbjct: 179 GDWIDGKYDGYGVETWARGSRYRGQYRQGLRHGHGVYRFYTGDVYAGE 226
>02_05_0795 - 31792231-31794780
Length = 849
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 134 FWTGRIDMYDHTTMEQGSWGTDF 202
FW GRID + H T + G G F
Sbjct: 564 FWDGRIDTFGHLTEDSGQRGEFF 586
>12_02_1243 + 27300978-27301682
Length = 234
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 178 LHGRVVVHVDPSS---PETDVTIEPSIQRQIFLFVASPRCHFP 59
L+GR VDP S P D+ P+ QR A+P HFP
Sbjct: 77 LYGRGKDRVDPRSKNVPGADIPNRPAGQRPATAPQANPNTHFP 119
>06_01_0624 + 4542344-4543447
Length = 367
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 131 GFWTGRIDMYDHTTMEQGSWGTDFRRGFEVAHDL 232
G T D HT +E G W F+ FE H+L
Sbjct: 213 GVGTYCFDTVKHTWIEVGKWMLPFQGKFEYVHEL 246
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 322 GPLGRAQRQPLRTDPRPAEADRRLQVHRRLCQAEICSGS 438
GP RA R+ + AEA R +RRL +AE S S
Sbjct: 43 GPKSRAARRREEDAEKRAEAAARKAENRRLAEAEAASAS 81
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 430 CKFLPGRVVDVLEGVYQ-LLRGADRFVR 350
CKFLP ++ + +GV Q +LRG F R
Sbjct: 280 CKFLPSKIAETEQGVAQAILRGNIDFKR 307
>02_05_0563 +
29998291-29998753,29999256-29999468,29999550-29999667,
30000227-30000355,30000438-30000810,30000890-30001147,
30001192-30001227
Length = 529
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 150 STCTTTRPWSRDRGEPTSGE 209
ST TT+RP D GEPT E
Sbjct: 46 STSTTSRPSPADEGEPTGWE 65
>05_03_0035 - 7592177-7592938
Length = 253
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 298 KRAPVPDAGPLGRAQRQP-LRTDPRPAEADRR 390
K P P++ P +A+RQP + +P+P A ++
Sbjct: 214 KSKPEPESKPEAKAERQPESKPEPKPESAPKK 245
>02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818
Length = 530
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 254 VYTDEAIKVVNSHNKSEPLFLMLAHSAVHSGNPYEPIRAPQKLIDA 391
V T+ +K+ +N FL+ S+ + G+ PI PQ L+ A
Sbjct: 125 VLTEFILKIARQNNLPPKPFLLALASSANIGSAATPIGNPQNLVIA 170
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -3
Query: 418 PGRVVDVLEGVYQLLRGADRFVRVAAVHGRVGQHQEQGLA 299
P ++ + + + + + D+ V+V A+H G H++ LA
Sbjct: 134 PEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLA 173
>01_01_0218 + 1856104-1856700,1856814-1857452
Length = 411
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 133 FLDWKDRHVRPHDHGAGIVGNRLQERFRGSS 225
+++W+ R P HGA V L + R S+
Sbjct: 342 YMEWRPRSPHPRSHGARDVTEELLRKMRSSA 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,510
Number of Sequences: 37544
Number of extensions: 359841
Number of successful extensions: 1094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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