Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0422
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.60 
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    26   4.2  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   9.8  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 139 FFKFIYVQWLQYLIATVCSFLTSVTNI*LENILLSRVLPTL*KKNEL 279
           F +F+ VQW  YLI   C+ +T  +N+   +  L R L  +   N L
Sbjct: 828 FPEFLLVQWKLYLIVACCT-ITYTSNVDYSHTDLRRTLTAVQSGNHL 873


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
 Frame = -3

Query: 488 LFLNLNTYN*APN*KLKKNIYL--TYMYYIWFSLN*-SLHAL--ARITMKY-IYISFFTT 327
           LF NLN  +  P   L  +IY+    ++ +  +LN  SL ++  +R+ + Y I I+++ T
Sbjct: 427 LFCNLNEGS--PKDYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFT 484

Query: 326 VILLYKGIDIIRHELGNSFFFHK 258
            +LL     IIR+E  N+  F+K
Sbjct: 485 DVLLKWFQPIIRYEFDNALIFYK 507


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 356 KYIYISFFTTVILLYKGIDIIRHELGNSFFFHKVGNTRESKIFSNQIL 213
           +++Y + F + +L +    I   E+     F  +  TR+  IFS  I+
Sbjct: 11  RFLYTTSFISAVLSFNQRPINMQEVREPRLFELLAETRDCNIFSELIM 58


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 284 LGNSFFFHKVGNTRESKIFSNQI 216
           +GN FFF+++G      I+SN+I
Sbjct: 254 IGNFFFFYEMGLFNIPVIYSNRI 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,091
Number of Sequences: 5004
Number of extensions: 40168
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)