Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0421
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    31   0.062
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   3.1  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   4.1  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 31.5 bits (68), Expect = 0.062
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 177 TCSNVYCISYI*INILSKSVLGTTTTMK*KLFVFD-LIAWCVECVTMIFL 323
           T S  Y I Y  IN+ S SVL TT+    K FV+  L+  CV  + +I L
Sbjct: 242 TTSRAYMIFYWSINVGSLSVLATTSLESTKGFVYAYLLPLCVFVIPLIIL 291


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 233 GLT*DIYLYVGNTIDIRTSEQMITIVDKIFLRLFCKLFFRESH 105
           G T  IY +    I I +  QM+   D I LR+F   F R +H
Sbjct: 333 GATICIYFFKELAISISSKMQMLDRRDPILLRVFRSDFQRVTH 375


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
 Frame = -2

Query: 386 QTIRRLTGKQNIEISESISAP*KYHSYTF-HAPR----NEIKYKKF----SFHRRG 246
           QT+    GK+  + SE  S+   +HS +  HAP     N+  YKK     SFH +G
Sbjct: 226 QTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKG 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,995
Number of Sequences: 5004
Number of extensions: 33430
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)